FastQCFastQC Report
Fri 1 Jun 2018
HVT5JBGX5_n01_03_26_GR_Dam_11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT5JBGX5_n01_03_26_GR_Dam_11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14761166
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGATCT535750.066.8591612
GAGGATC1721750.066.70067611
AGGATCA521600.066.19707512
AGGATCG248750.065.85834512
GGATCTA50750.065.5814813
CGAGGAT1755950.065.5231510
CCGAGGA1760750.065.410129
GGTCGCG1800900.065.1189651
GGATCTC166950.065.08964513
GGATCAA124450.065.0455313
GGATCTT155400.064.7025413
CGGCCGA1849050.064.4656456
GGCCGAG1858950.064.148547
GGATCCA138150.064.0163813
GCCGAGG1873100.063.592728
GGATCAT150650.063.5135113
GGATCCC86250.063.4620913
GGATCTG183600.063.45675313
GTCGCGG1859750.063.2404562
GGATCAC124600.063.05725513
Produced by FastQC (version 0.11.5)