FastQCFastQC Report
Fri 1 Jun 2018
HVT5JBGX5_n01_03_12_GR_Dam_bZIP1_9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT5JBGX5_n01_03_12_GR_Dam_bZIP1_9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24888799
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGATCT896750.067.3308712
GAGGATC2619500.067.2059711
AGGATCA805750.066.7170912
GGTCGCG2646950.066.528261
AGGATCG303900.066.2997112
GGATCTT328800.065.98492413
GGATCCA230650.065.8705413
GGATCTA119400.065.8648413
GGATCTC254450.065.8439513
CGGCCGA2723650.065.839046
CGAGGAT2687100.065.6337810
CCGAGGA2695000.065.484379
GGCCGAG2743300.065.414827
GTCGCGG2706050.065.2408752
GCCGAGG2758900.065.017168
GGATCAA250000.065.0000313
CGCGGCC2758200.064.5916064
GGATCTG219750.064.582813
GGATCCC113300.064.5302613
GGATCGT76350.064.4053813
Produced by FastQC (version 0.11.5)