FastQCFastQC Report
Fri 1 Jun 2018
HVT5JBGX5_n01_03_12_GR_Dam_bZIP1_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT5JBGX5_n01_03_12_GR_Dam_bZIP1_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21407448
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGGATC2472150.066.91720611
AGGATCT831650.066.9071512
AGGATCA742700.066.7445512
AGGATCG306650.066.3552712
GGTCGCG2497300.065.889421
GGATCTT270750.065.7697313
CCGAGGA2522900.065.732349
CGAGGAT2526850.065.5777310
GGATCAA202950.065.4612913
CGGCCGA2561000.065.3685466
GGATCTA95950.065.2548513
GGATCCA214950.065.1771813
GGATCTC252250.065.1406113
GGCCGAG2573200.065.1143347
GGATCCG115400.064.6589713
GGATCCC115900.064.5310113
GGATCAT236100.064.52679413
GTCGCGG2559650.064.4978942
GGATCTG236650.064.4655613
GCCGAGG2600500.064.411778
Produced by FastQC (version 0.11.5)