FastQCFastQC Report
Fri 1 Jun 2018
HVT5JBGX5_n01_03_12_GR_Dam_8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT5JBGX5_n01_03_12_GR_Dam_8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20066899
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCG1938000.067.029021
GAGGATC1970650.066.6175211
AGGATCT705200.066.58240512
AGGATCA605100.065.9886412
AGGATCG215500.065.9042612
CGGCCGA2013300.065.7700046
GTCGCGG1986700.065.619562
GGATCTC184050.065.33835613
GGCCGAG2030100.065.269487
GGATCTT287250.065.2576513
CGCGGCC2020750.065.051014
CGAGGAT2021300.065.0053510
GGATCCA180100.064.9835513
GCCGAGG2039900.064.961238
TCGCGGC2009650.064.915493
CCGAGGA2026350.064.859379
GCGGCCG2042250.064.836125
GGATCTG148150.064.4692713
GGATCCG85450.064.3859913
GGATCTA104500.064.3706713
Produced by FastQC (version 0.11.5)