FastQCFastQC Report
Fri 1 Jun 2018
HVT5JBGX5_n01_03_12_GR_Dam_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVT5JBGX5_n01_03_12_GR_Dam_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17552026
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCG1892650.066.884041
AGGATCT693450.066.7053712
GAGGATC1919950.066.62607611
AGGATCA580100.066.3157912
AGGATCG211550.065.8766212
CGGCCGA1971650.065.733616
CCGAGGA1954650.065.624339
GGATCTT277850.065.5629313
CGAGGAT1956700.065.4623810
GTCGCGG1939850.065.383352
GGCCGAG1984300.065.374517
GGATCTC188200.065.254713
GCCGAGG1995950.065.001518
GGATCTA97800.064.91521513
CGCGGCC1983700.064.899874
GGATCCG83550.064.6768513
GGATCAA188600.064.52248413
TCGCGGC1969550.064.443793
GCGGCCG2012500.064.432575
GGATCTG148600.064.1087613
Produced by FastQC (version 0.11.5)