FastQCFastQC Report
Sat 16 Jun 2018
HVJJYBGX5_n02_ATAC_MP-1000_5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHVJJYBGX5_n02_ATAC_MP-1000_5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38420177
Sequences flagged as poor quality0
Sequence length76
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7204591.8752099970804403No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA117600.027.48416548
CATTAAA121250.026.8612553
ATCATTA129300.025.2149851
AGGGGGG122050.024.0790566
ATTAAAA139500.023.6231754
GTATCAT139400.023.31176449
AAGGGGG128000.022.84900565
AAAGGGG130350.022.70557464
TATCATT147250.022.40210750
TCATTAA146650.022.32836252
GCCGTAT156300.021.01255246
CCGTATC164050.020.23571847
TTAAAAA163850.020.19801555
AAAAGGG153800.019.44834763
TAAAAAA182850.018.29071256
GTGTAGA1831500.018.06334970
TGTAGAT1391350.017.2742970
AGTGTAG2375950.017.05719870
CGCCGTA196650.016.71547745
GAGTGTA3014700.015.7380970
Produced by FastQC (version 0.11.5)