FastQCFastQC Report
Sat 23 Jun 2018
HJV33BCX2_l02_n02_ATAC_Root_Rep3_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV33BCX2_l02_n02_ATAC_Root_Rep3_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28989798
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGACGC625700.023.03001845
TGACGCT272800.020.41774445
TCTGACG834250.018.6756245
ATCTGAC1046800.014.92186844
CATCTGA1179000.013.2411343
GTATAGA15850.012.0631451
ACATCTG1324400.011.85066442
GTACTAG6850.011.8217771
CTAGACT7250.011.79007154
GTGTAAG15850.011.7793051
GTGTTAG9400.011.7257081
GTCCTAC22400.011.447951
GTGTAGA42200.011.1938051
TACACCG96700.011.0728735
GTATAGG18650.010.975731
GTGTAGG45200.010.7992141
CACATCT1449900.010.7870841
GTGTAAC17550.010.7664631
TCTACAC40750.010.7641033
GTATAAG12550.010.7542071
Produced by FastQC (version 0.11.5)