FastQCFastQC Report
Sat 23 Jun 2018
HJV33BCX2_l02_n02_ATAC_Root_Rep2_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV33BCX2_l02_n02_ATAC_Root_Rep2_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25136976
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGACGC575750.023.49157345
TGACGCT242800.021.13283345
TCTGACG775000.018.65995445
ATCTGAC963850.015.01271544
CATCTGA1085500.013.35105243
GTGCTAG11650.013.32276251
TACACTG14300.012.7417655
GTCCTAG7250.012.4106091
GTCTAGA7300.012.3256041
ACATCTG1223850.011.90845342
GTACAGA16750.011.8178631
GTCTAGG9650.011.6550421
GTATAGA14100.011.6459471
GTCCTAC22850.011.5178331
TACACCG71300.011.3893325
GTGTAGA39950.011.20488551
TTACACT10900.011.14392954
GTGCTAC22000.011.0426211
GTCCTAA7150.011.0111611
CACATCT1326800.010.92597141
Produced by FastQC (version 0.11.5)