FastQCFastQC Report
Sat 23 Jun 2018
HJV33BCX2_l02_n02_ATAC_Root_Rep2_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV33BCX2_l02_n02_ATAC_Root_Rep2_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31735216
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGACGCT384050.025.7360245
CTGACGC922500.024.81457345
TCTGACG1310900.018.25207345
ATCTGAC1628650.014.70195844
GTCCTAG9600.013.1216741
CATCTGA1831600.013.06807943
GTACTAG5950.012.475831
ACATCTG2046550.011.74656142
GTATAGA14600.011.555291
GTGTAAG14950.011.4352281
TACACCG87050.010.9308085
TACACTG14000.010.9260085
CACATCT2204050.010.87721341
GTCTTAG8350.010.7757111
GGATAGG34550.010.4170411
GTGTAAC16750.010.3406621
CTACACA12650.010.3135924
TCTACAC44750.010.2543843
CTACACT12750.010.23274
GTCCTAC24750.010.1792381
Produced by FastQC (version 0.11.5)