FastQCFastQC Report
Sat 23 Jun 2018
HJV33BCX2_l02_n02_ATAC_Root_Rep1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV33BCX2_l02_n02_ATAC_Root_Rep1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26987282
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGACGC540200.022.10500745
TGACGCT246900.019.6337245
TCTGACG693150.018.32798445
ATCTGAC862600.014.73495344
CATCTGA977150.013.00996843
GTGTTAG9800.012.3948491
TCTAGTA5900.011.8190682
GTGTAAG14750.011.7428161
ACATCTG1112550.011.48149442
GTCTAGA7900.011.3895471
TACACCG82950.011.36255555
GTCCTAG8750.011.3114471
GTACAGA20150.011.1634521
GTCTAGC11400.011.0498591
GTCCTAC26250.010.9686761
GTGTAGA44550.010.9063551
CTAGACT7250.010.8593444
GGGTAAG22000.010.8381891
GTACTAG8350.010.7757391
GTTCTAG10700.010.7216091
Produced by FastQC (version 0.11.5)