FastQCFastQC Report
Sat 23 Jun 2018
HJV33BCX2_l02_n01_ATAC_Root_Rep2_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV33BCX2_l02_n01_ATAC_Root_Rep2_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25136976
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCGAG477950.028.02515245
TCCGAGC194900.026.01021445
TCTCCGA801600.018.09368945
ATCTCCG1005050.014.461308544
GTACAGA16150.012.96431351
GTGTAAG14850.012.88641
CATCTCC1145700.012.70366643
TACACCG72000.012.5640485
GTATAGA14850.012.2799821
CTATACT7900.012.2483444
TATACTG11400.012.238355
GTGTTAG8300.012.2060051
ACATCTC1211250.011.96784842
TAGACTG9400.011.7301695
GTATAGG14000.011.4174591
GTCTAGT6800.011.2566491
GTCTTAC13050.011.0410041
CTACACT9800.011.0217674
CACATCT1324500.010.96164741
CCTACAC38500.010.9299183
Produced by FastQC (version 0.11.5)