FastQCFastQC Report
Sat 23 Jun 2018
HJV33BCX2_l02_n01_ATAC_Root_Rep1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV33BCX2_l02_n01_ATAC_Root_Rep1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26987282
Sequences flagged as poor quality0
Sequence length51
%GC64

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCGAG436400.027.14597345
TCCGAGC187500.025.46454245
TCTCCGA722650.017.60433445
ATCTCCG907250.014.03346144
GTGTTAG8450.012.5222531
CATCTCC1044850.012.21764943
GTCCTAC25050.011.5937341
ACATCTC1100900.011.5383642
GTATAGA13650.011.3804051
TACACCG83450.011.2177225
GTGTAAG14900.010.7278671
TACACTG13450.010.5403735
GTGTTAC12850.010.51211
CACATCT1210900.010.51069841
GTGTAGG43950.010.4499121
GTGTAGA42150.010.3620441
GTCCTAG8800.010.2333691
GTGCTAC28500.010.1902811
TAGACTG9500.09.9486315
GTCTAGA7700.09.9409881
Produced by FastQC (version 0.11.5)