FastQCFastQC Report
Sat 23 Jun 2018
HJV33BCX2_l01_n02_ATAC_Root_Rep2_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV33BCX2_l01_n02_ATAC_Root_Rep2_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24497891
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGACGC550500.023.35579145
TGACGCT244100.020.99340645
TCTGACG750500.018.64608845
ATCTGAC933800.015.00459644
GTCCTAG7350.014.3836321
CATCTGA1055300.013.2749143
GTGTAAG11700.013.2654281
GTATAAG11750.012.0603721
GTCCTAC21450.011.84975051
ACATCTG1188150.011.80930942
GTACTAG5550.011.7533871
GTGTTAG8700.011.6345961
GTCTAGA7050.011.4860681
GTCTAGT7500.011.3967321
GTGTAGA38350.011.3787461
TACACCG68450.011.1071385
GGGTAAG19350.011.0433451
CACATCT1294000.010.88838341
GTGCTAG9800.010.78772451
TAGACTG9000.010.7469415
Produced by FastQC (version 0.11.5)