FastQCFastQC Report
Sat 23 Jun 2018
HJV33BCX2_l01_n02_ATAC_Root_Rep1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV33BCX2_l01_n02_ATAC_Root_Rep1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26287136
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGACGC525650.022.48066945
TGACGCT232300.020.9057745
TCTGACG685150.018.24248945
ATCTGAC853450.014.64457744
CATCTGA961850.013.00115843
GTGTAAG15050.012.4057691
GTGCTAG11900.011.9090121
GTCTTAG7500.011.6972951
ACATCTG1095600.011.49391742
GTGTAGG41450.011.3423711
TAGACTG8400.011.2475075
GTCCTAC26250.011.1402821
GGTCTAG8100.011.1085431
GTCTAGG10500.010.7118091
TACACCG82450.010.6677385
CACATCT1201900.010.52404541
GTGTAGA37950.010.4916461
GTCCTAG8700.010.3424371
GTCTAGC10450.010.332541
GTGTTAG9150.010.0796371
Produced by FastQC (version 0.11.5)