FastQCFastQC Report
Sat 23 Jun 2018
HJV33BCX2_l01_n01_ATAC_Root_Rep3_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV33BCX2_l01_n01_ATAC_Root_Rep3_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28261848
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCGAG508050.027.38053945
TCCGAGC208900.025.61076745
TCTCCGA852250.018.25996645
ATCTCCG1064750.014.58850544
GTCTTAG7300.014.1913071
CATCTCC1216850.012.83897543
ACATCTC1292550.012.0700442
GTGCTAG13600.011.4260881
GTCTAAG8550.011.3263441
GGGTAAG23500.011.308411
CTACACT12650.011.2112594
GGGTTAC27650.011.1586811
GTGTAAG14400.011.1040971
CACATCT1419050.010.98296841
TACACCG90400.010.932025
TTACACT10100.010.921424
GTGTAGA40300.010.7854841
GTGTTAG10700.010.7343021
GTGTTAC16350.010.6062141
GTTCTAG9950.010.4117131
Produced by FastQC (version 0.11.5)