FastQCFastQC Report
Sat 23 Jun 2018
HJV33BCX2_l01_n01_ATAC_Root_Rep2_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV33BCX2_l01_n01_ATAC_Root_Rep2_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30932508
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGAGC309400.029.6825145
CTCCGAG791100.028.18319145
TCTCCGA1309150.017.76278345
ATCTCCG1636750.014.22153544
GTCTTAG8400.013.4062231
CATCTCC1852300.012.61639243
ACTCCTA16350.012.52157531
CTACACT11500.012.3323214
GTGTAAG15150.012.0417091
GTATAGG17300.011.977261
ACATCTC1971100.011.84157242
GTGCTAG10350.011.5332381
GTGTAGA43900.011.3381831
TACACCG83900.011.2691075
GTCTAGA7800.011.2612281
TATACTG11000.011.2556915
CACATCT2146850.010.87846141
GTATTAG7050.010.8618931
GGATAGG33400.010.78921
TCTACAC42300.010.643683
Produced by FastQC (version 0.11.5)