FastQCFastQC Report
Sat 23 Jun 2018
HJV33BCX2_l01_n01_ATAC_Root_Rep1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV33BCX2_l01_n01_ATAC_Root_Rep1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26287136
Sequences flagged as poor quality0
Sequence length51
%GC64

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCGAG439800.026.61631845
TCCGAGC188300.025.62868545
TCTCCGA716500.017.55588345
ATCTCCG899300.013.99755944
GTGTTAG9650.013.3034371
CATCTCC1028450.012.29447443
GTGTAGG41950.012.1873771
GTCCTAC23950.011.6609121
ACATCTC1088000.011.58877842
GTCCTAG7550.011.3358211
GTGTAGA41650.011.2477251
GTGTAAG14450.011.2222781
GTGCTAC28550.011.123191
GGTCTAG8750.011.0681941
CTACACT11900.010.9719364
GTCTAGC9450.010.9633271
GTCTAGT7050.010.8619091
GTGCTAG11700.010.7799941
GGGTAAG20950.010.6430851
GTCTTAG6600.010.5787451
Produced by FastQC (version 0.11.5)