FastQCFastQC Report
Sat 25 Aug 2018
HHL33BGX7_n01_4_ChIP_NLP7_180_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHL33BGX7_n01_4_ChIP_NLP7_180_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11635140
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACTAGC118600.043.55987531
TCACTAG125500.041.19283330
TATGCCG29900.040.85952446
ACTAGCT126800.040.66114432
TAGCTTA127750.040.30345534
AGTCACT129650.040.03832628
CTCCAGT131800.039.3292124
GTCACTA132450.039.2154829
ACGTCTG133600.039.0020415
ACTCCAG133600.038.7991623
CAGTCAC135250.038.25065227
CGTCTGA137250.038.06714216
CCAGTCA137950.037.45093526
CGTATGC29350.037.21093444
ACACGTC141450.037.13313
GCACACG140200.037.08967611
CACACGT140900.037.0544312
TCCAGTC140350.037.0090825
GCTTATC132400.036.48240736
CTGAACT143400.036.36337719
Produced by FastQC (version 0.11.5)