FastQCFastQC Report
Sat 25 Aug 2018
HHL33BGX7_n01_13_C_R_TGA1_Col_GR.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHL33BGX7_n01_13_C_R_TGA1_Col_GR.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33128234
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC48400.014.68236146
GTATGCC51400.013.825747547
TATGCCG57100.012.87496748
ATGCCGT53900.012.60021249
CGTACGT85050.011.440824534
TGCCGTC60950.010.74068950
CCGTACG94800.010.22718933
GTACGTA98800.09.9551135
TACGTAA98150.09.80718436
AATCTCG94000.08.7146341
ATCTCGT95000.08.62285842
TCTCGTA89900.08.29453443
AGTCACC219350.08.24812470
CACCGTA145250.07.878325570
GTCACCG204150.07.71374770
ACGTAAT132500.07.68815837
ACCGTAC135250.07.606981370
TCACCGT185050.07.29962470
TCTGAAC698400.06.969878770
ACTCCAG469150.06.67595870
Produced by FastQC (version 0.11.5)