FastQCFastQC Report
Sat 25 Aug 2018
HHL33BGX7_n01_11_C_R_NLP7_nlp7_GR.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHL33BGX7_n01_11_C_R_NLP7_nlp7_GR.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33304218
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC61150.019.2916646
GTATGCC61850.019.24363747
TATGCCG68900.017.37635648
GGCCTTA105000.014.80096536
GCCGTCT69150.014.32669651
TCGTATG94900.012.76276445
CTCGTAT98450.012.44470444
ATGCCGT101150.011.52467949
GCCTTAT133100.011.51965337
TCTCGTA110900.011.04848343
TATCTCG119650.010.91314441
CCGTCTT101150.010.1748552
CGTGGCC155150.010.12929433
GTGGCCT156300.010.054872534
ATCTCGT133200.09.85547442
AGTCACG275550.08.30579470
GTCACGT232450.08.18979770
CACGTGG197700.08.0197831
TCACGTG211000.07.479935670
TTATCTC177350.07.441525540
Produced by FastQC (version 0.11.5)