HGWHTBGX7_n02_cDNA_d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGWHTBGX7_n02_cDNA_d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	78764942
Sequences flagged as poor quality	0
Sequence length	50
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	5575983	7.079270114869125	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	574539	0.7294349305811715	No Hit
GCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	352759	0.4478629591322495	No Hit
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	226703	0.28782221410129394	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGCAGT	645745	42.335896	1
AGCAGTG	676330	40.345352	2
TCAACGC	708290	38.5119	12
ATCAACG	708815	38.510597	11
TGGTATC	708105	38.454906	7
GTGGTAT	709135	38.41573	6
CAACGCA	710835	38.40925	13
TATCAAC	713690	38.28403	10
GTATCAA	712220	38.268536	9
GGTATCA	713010	38.239117	8
AGTGGTA	714185	38.18025	5
AACGCAG	718220	38.04329	14
CAGTGGT	717175	37.984066	4
ACGCAGA	719315	37.92291	15
AGAGTAC	714370	37.777958	19
CGCAGAG	723035	37.74451	16
GCAGAGT	723655	37.521763	17
CAGAGTA	723690	37.46144	18
GAGTACT	715910	37.409603	20
GCAGTGG	731115	37.306427	3