[2018-07-28 07:18:06,869] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/20170330/intel/lib/python2.7/site-packages/multiqc-1.0.dev0-py2.7.egg/multiqc_config.yaml
[2018-07-28 07:18:06,869] multiqc [DEBUG ] No MultiQC config found: /home/mk5636/.multiqc_config.yaml
[2018-07-28 07:18:06,870] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2018-07-28 07:18:06,871] multiqc [DEBUG ] Loading config settings from: /beegfs/mk5636/scripts/mqc_config.yaml
[2018-07-28 07:18:06,871] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2018-07-28 07:18:06,871] multiqc [DEBUG ] Command used: /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /beegfs/mk5636/scripts/mqc_config.yaml /beegfs/mk5636/logs/html/H5CCNBCX2/2
[2018-07-28 07:18:06,871] multiqc [DEBUG ] Could not connect to multiqc.info for version check
[2018-07-28 07:18:06,871] multiqc [INFO ] This is MultiQC v1.0.dev0
[2018-07-28 07:18:06,871] multiqc [DEBUG ] Command : /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /beegfs/mk5636/scripts/mqc_config.yaml /beegfs/mk5636/logs/html/H5CCNBCX2/2
[2018-07-28 07:18:06,872] multiqc [DEBUG ] Working dir : /beegfs/mk5636/logs/html/H5CCNBCX2/2
[2018-07-28 07:18:06,872] multiqc [INFO ] Template : default
[2018-07-28 07:18:06,872] multiqc [DEBUG ] Running in --force mode, will overwrite any existing reports.
[2018-07-28 07:18:06,872] multiqc [INFO ] Searching '/beegfs/mk5636/logs/html/H5CCNBCX2/2'
[2018-07-28 07:18:06,872] multiqc [DEBUG ] Analysing modules: rna_seqc, custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow
[2018-07-28 07:18:06,872] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-7847428/tmp15TV1P
[2018-07-28 07:18:07,103] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,125] multiqc.modules.custom_content.custom_content [INFO ] demux_report-2: Found 13 samples (table)
[2018-07-28 07:18:07,127] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2018-07-28 07:18:07,138] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,143] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,149] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2018-07-28 07:18:07,160] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,219] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,225] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,434] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,440] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,448] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,498] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,548] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,598] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,647] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:07,653] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,164] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,171] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,218] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,350] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,398] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,412] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,418] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,426] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,473] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,758] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found.
[2018-07-28 07:18:08,766] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,771] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,817] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,864] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,910] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:08,956] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:09,002] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:09,008] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:10,242] multiqc.modules.fastqc.fastqc [INFO ] Found 13 reports
[2018-07-28 07:18:11,197] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H5CCNBCX2/2',)
[2018-07-28 07:18:11,218] multiqc [INFO ] Report : multiqc_report.html
[2018-07-28 07:18:11,219] multiqc [INFO ] Data : multiqc_data
[2018-07-28 07:18:11,219] multiqc [DEBUG ] Moving data file from '/state/partition1/job-7847428/tmp15TV1P/multiqc_data/multiqc_general_stats.txt' to '/beegfs/mk5636/logs/html/H5CCNBCX2/2/multiqc_data'
[2018-07-28 07:18:11,221] multiqc [DEBUG ] Moving data file from '/state/partition1/job-7847428/tmp15TV1P/multiqc_data/multiqc_fastqc.txt' to '/beegfs/mk5636/logs/html/H5CCNBCX2/2/multiqc_data'
[2018-07-28 07:18:11,222] multiqc [DEBUG ] Moving data file from '/state/partition1/job-7847428/tmp15TV1P/multiqc_data/multiqc_sources.txt' to '/beegfs/mk5636/logs/html/H5CCNBCX2/2/multiqc_data'
[2018-07-28 07:18:11,345] multiqc [INFO ] MultiQC complete