FastQCFastQC Report
Sat 28 Jul 2018
H5CCNBCX2_l01_n01_AntOrMB7.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5CCNBCX2_l01_n01_AntOrMB7.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15601455
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCATA43000.011.04783254
GTATGCC76750.09.96405146-47
CGGGGAT71300.09.9284461
TATGCCG87100.09.62531748-49
CGGGAAT87400.09.567221
GGGGATC52650.08.75223352
CGGGGAC63200.08.5698311
CCGGGAT61650.08.5541021
GGGGAAT53950.08.5421031
GGGGGAT46050.08.4599681
CTGGGTT20850.08.4310211
TGCTTGA101300.08.39328760-61
CGGGTAT40800.08.2676621
GGGAATC65550.08.2618582
CGTATGC103900.08.22896946-47
CCCGGAT45200.08.1986191
CTGGAAT72100.08.1050251
ATGCCGT96850.08.04327148-49
CCGGGGT34900.07.89563561
GCCGTCT102400.07.83926250-51
Produced by FastQC (version 0.11.5)