MultiQC Report

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

General Statistics

Showing ¹⁸²/₁₈₂ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
H55FTAFXY_n01_p6A6	0.0%	60%	151	27%	0.0
H55FTAFXY_n01_p6A8	0.0%	33%	151	36%	0.0
H55FTAFXY_n01_p6A9	0.0%	66%	151	27%	0.0
H55FTAFXY_n01_p6B1	0.0%	45%	151	33%	0.0
H55FTAFXY_n01_p6B10	0.0%	44%	151	25%	0.0
H55FTAFXY_n01_p6B11	0.0%	47%	151	25%	0.0
H55FTAFXY_n01_p6B12	0.0%	51%	151	42%	0.0
H55FTAFXY_n01_p6B2	0.0%	47%	151	42%	0.0
H55FTAFXY_n01_p6B3	0.0%	47%	151	42%	0.0
H55FTAFXY_n01_p6B4	0.0%	47%	151	36%	0.0
H55FTAFXY_n01_p6B5	0.0%	47%	151	33%	0.0
H55FTAFXY_n01_p6B6	0.0%	50%	151	36%	0.0
H55FTAFXY_n01_p6B7	0.0%	50%	151	33%	0.0
H55FTAFXY_n01_p6B8	4.8%	51%	151	25%	0.0
H55FTAFXY_n01_p6B9	0.0%	54%	151	33%	0.0
H55FTAFXY_n01_p6C1	0.0%	53%	151	36%	0.0
H55FTAFXY_n01_p6C10	0.0%	51%	151	36%	0.0
H55FTAFXY_n01_p6C11	0.0%	48%	151	27%	0.0
H55FTAFXY_n01_p6C12	0.0%	50%	151	25%	0.0
H55FTAFXY_n01_p6C2	0.0%	47%	151	33%	0.0
H55FTAFXY_n01_p6C3	0.0%	54%	151	18%	0.0
H55FTAFXY_n01_p6C4	0.0%	53%	151	27%	0.0
H55FTAFXY_n01_p6C5	0.0%	50%	151	33%	0.0
H55FTAFXY_n01_p6C6	0.0%	52%	151	27%	0.0
H55FTAFXY_n01_p6C7	0.0%	51%	151	42%	0.0
H55FTAFXY_n01_p6C8	0.0%	54%	151	33%	0.0
H55FTAFXY_n01_p6C9	0.0%	50%	151	36%	0.0
H55FTAFXY_n01_p6D1	0.0%	45%	151	42%	0.0
H55FTAFXY_n01_p6D10	1.9%	45%	151	42%	0.0
H55FTAFXY_n01_p6D11	0.0%	43%	151	42%	0.0
H55FTAFXY_n01_p6D12	0.0%	45%	151	25%	0.0
H55FTAFXY_n01_p6D2	0.0%	44%	151	33%	0.0
H55FTAFXY_n01_p6D3	0.7%	45%	151	42%	0.0
H55FTAFXY_n01_p6D4	0.0%	47%	151	42%	0.0
H55FTAFXY_n01_p6D5	0.0%	46%	151	33%	0.0
H55FTAFXY_n01_p6D6	0.0%	47%	151	25%	0.0
H55FTAFXY_n01_p6D7	0.0%	44%	151	42%	0.0
H55FTAFXY_n01_p6D8	0.0%	48%	151	42%	0.0
H55FTAFXY_n01_p6D9	0.0%	48%	151	33%	0.0
H55FTAFXY_n01_p6E1	0.0%	46%	151	36%	0.0
H55FTAFXY_n01_p6E10	0.0%	49%	151	25%	0.0
H55FTAFXY_n01_p6E11	0.0%	46%	151	25%	0.0
H55FTAFXY_n01_p6E12	0.0%	52%	151	33%	0.0
H55FTAFXY_n01_p6E2	5.6%	48%	151	33%	0.0
H55FTAFXY_n01_p6E3	0.0%	58%	151	27%	0.0
H55FTAFXY_n01_p6E4	0.0%	46%	151	36%	0.0
H55FTAFXY_n01_p6E5	0.0%	54%	151	36%	0.0
H55FTAFXY_n01_p6E6	3.2%	49%	151	33%	0.0
H55FTAFXY_n01_p6E7	0.0%	53%	151	27%	0.0
H55FTAFXY_n01_p6E8	0.0%	53%	151	25%	0.0
H55FTAFXY_n01_p6E9	3.1%	49%	151	25%	0.0
H55FTAFXY_n01_p6F1	0.0%	50%	151	42%	0.0
H55FTAFXY_n01_p6F10	1.9%	50%	151	42%	0.0
H55FTAFXY_n01_p6F11	2.0%	48%	151	50%	0.0
H55FTAFXY_n01_p6F12	0.0%	52%	151	45%	0.0
H55FTAFXY_n01_p6F2	1.1%	48%	151	42%	0.0
H55FTAFXY_n01_p6F3	0.0%	49%	151	42%	0.0
H55FTAFXY_n01_p6F4	0.0%	52%	151	42%	0.0
H55FTAFXY_n01_p6F5	2.9%	52%	151	42%	0.0
H55FTAFXY_n01_p6F6	0.0%	50%	151	25%	0.0
H55FTAFXY_n01_p6F7	0.7%	48%	151	42%	0.0
H55FTAFXY_n01_p6F8	0.0%	52%	151	33%	0.0
H55FTAFXY_n01_p6F9	0.0%	54%	151	42%	0.0
H55FTAFXY_n01_p6G1	0.0%	45%	151	27%	0.0
H55FTAFXY_n01_p6G10	0.0%	47%	151	27%	0.0
H55FTAFXY_n01_p6G11	0.0%	43%	151	27%	0.0
H55FTAFXY_n01_p6G12	0.0%	57%	151	27%	0.0
H55FTAFXY_n01_p6G2	0.0%	42%	151	33%	0.0
H55FTAFXY_n01_p6G3	0.0%	48%	151	27%	0.0
H55FTAFXY_n01_p6G4	0.0%	49%	151	27%	0.0
H55FTAFXY_n01_p6G5	0.0%	43%	151	27%	0.0
H55FTAFXY_n01_p6G6	0.0%	41%	151	33%	0.0
H55FTAFXY_n01_p6G8	0.0%	45%	151	25%	0.0
H55FTAFXY_n01_p6G9	0.0%	43%	151	33%	0.0
H55FTAFXY_n01_p6H1	0.0%	44%	151	27%	0.0
H55FTAFXY_n01_p6H10	0.0%	65%	151	36%	0.0
H55FTAFXY_n01_p6H11	0.0%	45%	151	27%	0.0
H55FTAFXY_n01_p6H12	0.0%	52%	151	36%	0.0
H55FTAFXY_n01_p6H2	0.0%	66%	151	27%	0.0
H55FTAFXY_n01_p6H4	0.0%	46%	151	27%	0.0
H55FTAFXY_n01_p6H5	0.0%	50%	151	27%	0.0
H55FTAFXY_n01_p6H6	0.0%	50%	151	27%	0.0
H55FTAFXY_n01_p6H7	0.0%	43%	151	27%	0.0
H55FTAFXY_n01_p6H8	0.0%	53%	151	27%	0.0
H55FTAFXY_n01_p6H9	0.0%	48%	151	27%	0.0
H55FTAFXY_n01_p7A10	0.0%	48%	151	27%	0.0
H55FTAFXY_n01_p7A11	0.0%	46%	151	27%	0.0
H55FTAFXY_n01_p7A12	0.0%	39%	151	36%	0.0
H55FTAFXY_n01_p7A2	0.0%	50%	151	36%	0.0
H55FTAFXY_n01_p7A3	0.0%	51%	151	36%	0.0
H55FTAFXY_n01_p7A4	0.0%	56%	151	45%	0.0
H55FTAFXY_n01_p7A5	0.0%	59%	151	36%	0.0
H55FTAFXY_n01_p7A6	0.0%	50%	151	45%	0.0
H55FTAFXY_n01_p7A7	0.0%	61%	151	36%	0.0
H55FTAFXY_n01_p7A8	0.0%	59%	151	27%	0.0
H55FTAFXY_n01_p7A9	0.0%	71%	151	27%	0.0
H55FTAFXY_n01_p7B1	0.0%	45%	151	27%	0.0
H55FTAFXY_n01_p7B10	0.0%	48%	151	36%	0.0
H55FTAFXY_n01_p7B11	0.0%	21%	151	36%	0.0
H55FTAFXY_n01_p7B12	0.0%	47%	151	25%	0.0
H55FTAFXY_n01_p7B2	0.0%	59%	151	27%	0.0
H55FTAFXY_n01_p7B3	0.0%	44%	151	33%	0.0
H55FTAFXY_n01_p7B4	0.0%	67%	151	36%	0.0
H55FTAFXY_n01_p7B5	0.0%	58%	151	27%	0.0
H55FTAFXY_n01_p7B6	0.0%	63%	151	27%	0.0
H55FTAFXY_n01_p7B7	0.0%	53%	151	36%	0.0
H55FTAFXY_n01_p7B8	0.0%	49%	151	27%	0.0
H55FTAFXY_n01_p7B9	0.0%	44%	151	27%	0.0
H55FTAFXY_n01_p7C1	1.8%	47%	151	42%	0.0
H55FTAFXY_n01_p7C10	0.0%	46%	151	42%	0.0
H55FTAFXY_n01_p7C11	0.0%	46%	151	50%	0.0
H55FTAFXY_n01_p7C12	0.0%	49%	151	42%	0.0
H55FTAFXY_n01_p7C2	0.0%	48%	151	33%	0.0
H55FTAFXY_n01_p7C3	0.0%	47%	151	33%	0.0
H55FTAFXY_n01_p7C4	0.0%	47%	151	42%	0.0
H55FTAFXY_n01_p7C5	0.0%	38%	151	25%	0.0
H55FTAFXY_n01_p7C6	0.0%	48%	151	42%	0.0
H55FTAFXY_n01_p7C7	1.3%	46%	151	42%	0.0
H55FTAFXY_n01_p7C8	0.0%	49%	151	33%	0.0
H55FTAFXY_n01_p7C9	0.0%	45%	151	33%	0.0
H55FTAFXY_n01_p7D1	0.0%	47%	151	27%	0.0
H55FTAFXY_n01_p7D10	0.0%	50%	151	33%	0.0
H55FTAFXY_n01_p7D11	0.0%	50%	151	25%	0.0
H55FTAFXY_n01_p7D12	0.0%	43%	151	36%	0.0
H55FTAFXY_n01_p7D2	0.0%	50%	151	25%	0.0
H55FTAFXY_n01_p7D3	0.0%	46%	151	42%	0.0
H55FTAFXY_n01_p7D4	0.0%	51%	151	33%	0.0
H55FTAFXY_n01_p7D5	0.0%	49%	151	33%	0.0
H55FTAFXY_n01_p7D6	0.0%	49%	151	27%	0.0
H55FTAFXY_n01_p7D7	0.0%	51%	151	25%	0.0
H55FTAFXY_n01_p7D8	0.0%	54%	151	36%	0.0
H55FTAFXY_n01_p7D9	5.0%	53%	151	33%	0.0
H55FTAFXY_n01_p7E1	0.0%	57%	151	36%	0.0
H55FTAFXY_n01_p7E10	0.0%	48%	151	33%	0.0
H55FTAFXY_n01_p7E11	0.0%	26%	151	27%	0.0
H55FTAFXY_n01_p7E12	0.0%	40%	151	36%	0.0
H55FTAFXY_n01_p7E2	0.0%	39%	151	33%	0.0
H55FTAFXY_n01_p7E3	0.0%	45%	151	27%	0.0
H55FTAFXY_n01_p7E4	0.0%	42%	151	36%	0.0
H55FTAFXY_n01_p7E5	0.0%	48%	151	25%	0.0
H55FTAFXY_n01_p7E6	0.0%	45%	151	33%	0.0
H55FTAFXY_n01_p7E7	0.0%	48%	151	36%	0.0
H55FTAFXY_n01_p7E8	0.0%	46%	151	36%	0.0
H55FTAFXY_n01_p7E9	0.0%	53%	151	33%	0.0
H55FTAFXY_n01_p7F1	0.0%	48%	151	27%	0.0
H55FTAFXY_n01_p7F10	0.0%	48%	151	33%	0.0
H55FTAFXY_n01_p7F11	0.0%	49%	151	36%	0.0
H55FTAFXY_n01_p7F12	0.0%	48%	151	25%	0.0
H55FTAFXY_n01_p7F2	0.0%	44%	151	25%	0.0
H55FTAFXY_n01_p7F3	0.0%	37%	151	27%	0.0
H55FTAFXY_n01_p7F4	0.0%	52%	151	27%	0.0
H55FTAFXY_n01_p7F5	0.0%	47%	151	25%	0.0
H55FTAFXY_n01_p7F6	0.0%	56%	151	36%	0.0
H55FTAFXY_n01_p7F7	0.0%	45%	151	33%	0.0
H55FTAFXY_n01_p7F8	9.1%	49%	151	25%	0.0
H55FTAFXY_n01_p7F9	0.0%	44%	151	33%	0.0
H55FTAFXY_n01_p7G1	0.0%	48%	151	25%	0.0
H55FTAFXY_n01_p7G10	0.0%	48%	151	50%	0.0
H55FTAFXY_n01_p7G11	0.0%	53%	151	25%	0.0
H55FTAFXY_n01_p7G12	1.7%	47%	151	50%	0.0
H55FTAFXY_n01_p7G2	0.0%	50%	151	42%	0.0
H55FTAFXY_n01_p7G3	0.0%	51%	151	50%	0.0
H55FTAFXY_n01_p7G4	0.0%	53%	151	33%	0.0
H55FTAFXY_n01_p7G5	0.0%	50%	151	50%	0.0
H55FTAFXY_n01_p7G6	0.0%	50%	151	33%	0.0
H55FTAFXY_n01_p7G7	0.0%	54%	151	25%	0.0
H55FTAFXY_n01_p7G8	0.0%	46%	151	42%	0.0
H55FTAFXY_n01_p7G9	0.0%	52%	151	33%	0.0
H55FTAFXY_n01_p7H1	0.0%	45%	151	36%	0.0
H55FTAFXY_n01_p7H10	0.0%	48%	151	33%	0.0
H55FTAFXY_n01_p7H11	0.0%	45%	151	33%	0.0
H55FTAFXY_n01_p7H12	0.0%	50%	151	33%	0.0
H55FTAFXY_n01_p7H2	0.0%	51%	151	33%	0.0
H55FTAFXY_n01_p7H3	0.0%	48%	151	45%	0.0
H55FTAFXY_n01_p7H4	0.0%	54%	151	36%	0.0
H55FTAFXY_n01_p7H5	7.7%	44%	151	33%	0.0
H55FTAFXY_n01_p7H6	0.0%	48%	151	25%	0.0
H55FTAFXY_n01_p7H7	0.0%	50%	151	42%	0.0
H55FTAFXY_n01_p7H8	0.0%	47%	151	42%	0.0
H55FTAFXY_n01_p7H9	10.0%	45%	151	25%	0.0
H55FTAFXY_n01_time1p7A1	0.0%	62%	151	27%	0.0
H55FTAFXY_n01_undetermined	78.4%	50%	151	33%	161.2

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

Demultiplexing Report

Demultiplexing Report
Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.

Showing ¹⁹³/₁₉₃ rows and ²/₂ columns.

Sample Name	Total Read Count	Portion (%)
undetermined_library	161,216,398	100.0
time2p6A1	0.0	0.0
p6A2	0.0	0.0
p6A3	0.0	0.0
p6A4	0.0	0.0
p6A5	0.0	0.0
p6A6	1.0	0.0
p6A7	0.0	0.0
p6A8	1.0	0.0
p6A9	1.0	0.0
p6A10	0.0	0.0
p6A11	0.0	0.0
p6A12	0.0	0.0
p6B1	40.0	0.0
p6B2	90.0	0.0
p6B3	83.0	0.0
p6B4	8.0	0.0
p6B5	46.0	0.0
p6B6	6.0	0.0
p6B7	109.0	0.0
p6B8	21.0	0.0
p6B9	107.0	0.0
p6B10	15.0	0.0
p6B11	11.0	0.0
p6B12	66.0	0.0
p6C1	9.0	0.0
p6C2	17.0	0.0
p6C3	3.0	0.0
p6C4	4.0	0.0
p6C5	12.0	0.0
p6C6	6.0	0.0
p6C7	27.0	0.0
p6C8	19.0	0.0
p6C9	6.0	0.0
p6C10	5.0	0.0
p6C11	4.0	0.0
p6C12	20.0	0.0
p6D1	75.0	0.0
p6D2	106.0	0.0
p6D3	137.0	0.0
p6D4	83.0	0.0
p6D5	171.0	0.0
p6D6	13.0	0.0
p6D7	75.0	0.0
p6D8	56.0	0.0
p6D9	29.0	0.0
p6D10	54.0	0.0
p6D11	56.0	0.0
p6D12	14.0	0.0
p6E1	4.0	0.0
p6E2	36.0	0.0
p6E3	4.0	0.0
p6E4	7.0	0.0
p6E5	6.0	0.0
p6E6	31.0	0.0
p6E7	6.0	0.0
p6E8	15.0	0.0
p6E9	32.0	0.0
p6E10	13.0	0.0
p6E11	13.0	0.0
p6E12	11.0	0.0
p6F1	53.0	0.0
p6F2	92.0	0.0
p6F3	27.0	0.0
p6F4	51.0	0.0
p6F5	102.0	0.0
p6F6	11.0	0.0
p6F7	145.0	0.0
p6F8	28.0	0.0
p6F9	33.0	0.0
p6F10	52.0	0.0
p6F11	51.0	0.0
p6F12	8.0	0.0
p6G1	1.0	0.0
p6G2	11.0	0.0
p6G3	3.0	0.0
p6G4	5.0	0.0
p6G5	8.0	0.0
p6G6	15.0	0.0
p6G7	0.0	0.0
p6G8	18.0	0.0
p6G9	31.0	0.0
p6G10	4.0	0.0
p6G11	8.0	0.0
p6G12	4.0	0.0
p6H1	3.0	0.0
p6H2	2.0	0.0
p6H3	0.0	0.0
p6H4	2.0	0.0
p6H5	2.0	0.0
p6H6	1.0	0.0
p6H7	1.0	0.0
p6H8	1.0	0.0
p6H9	5.0	0.0
p6H10	4.0	0.0
p6H11	1.0	0.0
p6H12	1.0	0.0
time1p7A1	1.0	0.0
p7A2	1.0	0.0
p7A3	3.0	0.0
p7A4	2.0	0.0
p7A5	3.0	0.0
p7A6	3.0	0.0
p7A7	1.0	0.0
p7A8	4.0	0.0
p7A9	2.0	0.0
p7A10	8.0	0.0
p7A11	2.0	0.0
p7A12	7.0	0.0
p7B1	1.0	0.0
p7B2	2.0	0.0
p7B3	12.0	0.0
p7B4	4.0	0.0
p7B5	1.0	0.0
p7B6	5.0	0.0
p7B7	4.0	0.0
p7B8	1.0	0.0
p7B9	3.0	0.0
p7B10	8.0	0.0
p7B11	1.0	0.0
p7B12	10.0	0.0
p7C1	56.0	0.0
p7C2	41.0	0.0
p7C3	36.0	0.0
p7C4	56.0	0.0
p7C5	22.0	0.0
p7C6	52.0	0.0
p7C7	79.0	0.0
p7C8	28.0	0.0
p7C9	116.0	0.0
p7C10	75.0	0.0
p7C11	65.0	0.0
p7C12	35.0	0.0
p7D1	6.0	0.0
p7D2	11.0	0.0
p7D3	11.0	0.0
p7D4	13.0	0.0
p7D5	10.0	0.0
p7D6	6.0	0.0
p7D7	12.0	0.0
p7D8	8.0	0.0
p7D9	20.0	0.0
p7D10	14.0	0.0
p7D11	12.0	0.0
p7D12	9.0	0.0
p7E1	5.0	0.0
p7E2	17.0	0.0
p7E3	9.0	0.0
p7E4	4.0	0.0
p7E5	19.0	0.0
p7E6	25.0	0.0
p7E7	8.0	0.0
p7E8	8.0	0.0
p7E9	25.0	0.0
p7E10	15.0	0.0
p7E11	2.0	0.0
p7E12	6.0	0.0
p7F1	3.0	0.0
p7F2	16.0	0.0
p7F3	6.0	0.0
p7F4	9.0	0.0
p7F5	13.0	0.0
p7F6	4.0	0.0
p7F7	20.0	0.0
p7F8	11.0	0.0
p7F9	10.0	0.0
p7F10	10.0	0.0
p7F11	8.0	0.0
p7F12	10.0	0.0
p7G1	26.0	0.0
p7G2	58.0	0.0
p7G3	58.0	0.0
p7G4	15.0	0.0
p7G5	84.0	0.0
p7G6	19.0	0.0
p7G7	19.0	0.0
p7G8	42.0	0.0
p7G9	40.0	0.0
p7G10	59.0	0.0
p7G11	12.0	0.0
p7G12	60.0	0.0
p7H1	5.0	0.0
p7H2	25.0	0.0
p7H3	7.0	0.0
p7H4	5.0	0.0
p7H5	13.0	0.0
p7H6	17.0	0.0
p7H7	32.0	0.0
p7H8	25.0	0.0
p7H9	10.0	0.0
p7H10	21.0	0.0
p7H11	12.0	0.0
p7H12	21.0	0.0

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Visible	Group	Column	Description	ID	Scale
\|\|			Total Read Count	Total Read Count	`Total Read Count`	None
\|\|			Portion (%)	Portion (%)	`Portion (%)`	None

Sample Name	Total # of Single-End Reads	Total # PF Reads	% Undetermined	% PhiX Aligned
4.0	189601992.0	161,220,796	100.0	0.0

Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	% Undetermined	% Undetermined	`% Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Quality Histograms

The mean quality value across each base position in the read. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

Click a heatmap row to see a line plot for that dataset.

rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (151bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

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General Statistics

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FastQC

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

rollover for sample name

Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

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About MultiQC

General Statistics

General Statistics: Columns

Demultiplexing Report

Table Zfnk: Columns

Run Statistics

Table Fcab: Columns

FastQC

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

rollover for sample name

Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

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