[2018-09-11 08:18:05,634] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/20170330/intel/lib/python2.7/site-packages/multiqc-1.0.dev0-py2.7.egg/multiqc_config.yaml
[2018-09-11 08:18:05,634] multiqc [DEBUG ] No MultiQC config found: /home/mk5636/.multiqc_config.yaml
[2018-09-11 08:18:05,634] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2018-09-11 08:18:05,670] multiqc [DEBUG ] Loading config settings from: /beegfs/mk5636/scripts/mqc_config.yaml
[2018-09-11 08:18:05,670] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2018-09-11 08:18:05,671] multiqc [DEBUG ] Command used: /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /beegfs/mk5636/scripts/mqc_config.yaml /beegfs/mk5636/logs/html/H55FTAFXY/merged
[2018-09-11 08:18:05,671] multiqc [DEBUG ] Could not connect to multiqc.info for version check
[2018-09-11 08:18:05,671] multiqc [INFO ] This is MultiQC v1.0.dev0
[2018-09-11 08:18:05,671] multiqc [DEBUG ] Command : /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /beegfs/mk5636/scripts/mqc_config.yaml /beegfs/mk5636/logs/html/H55FTAFXY/merged
[2018-09-11 08:18:05,671] multiqc [DEBUG ] Working dir : /beegfs/mk5636/logs/html/H55FTAFXY/merged
[2018-09-11 08:18:05,671] multiqc [INFO ] Template : default
[2018-09-11 08:18:05,671] multiqc [DEBUG ] Running in --force mode, will overwrite any existing reports.
[2018-09-11 08:18:05,671] multiqc [INFO ] Searching '/beegfs/mk5636/logs/html/H55FTAFXY/merged'
[2018-09-11 08:18:05,671] multiqc [DEBUG ] Analysing modules: rna_seqc, custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow
[2018-09-11 08:18:05,671] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-8578075/tmpLTP5Mq
[2018-09-11 08:18:06,325] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:06,478] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 193 samples (table)
[2018-09-11 08:18:06,479] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2018-09-11 08:18:06,562] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:06,588] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:06,595] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2018-09-11 08:18:06,711] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:11,069] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:11,091] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:13,221] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:13,241] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:13,278] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:13,787] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:14,308] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:14,808] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:15,315] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:15,336] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:20,505] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:20,528] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:21,094] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:22,749] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:23,310] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:23,396] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:23,416] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:23,453] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:23,997] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:27,188] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found.
[2018-09-11 08:18:27,226] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:27,248] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:27,822] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:28,378] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:28,938] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:29,505] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:30,062] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:30,084] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:30,236] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H55FTAFXY_n01_p6H3_fastqc.zip' - Bad zip file
[2018-09-11 08:18:30,237] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error:
File is not a zip file
[2018-09-11 08:18:30,417] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H55FTAFXY_n01_p6A2_fastqc.zip' - Bad zip file
[2018-09-11 08:18:30,417] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error:
File is not a zip file
[2018-09-11 08:18:30,671] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H55FTAFXY_n01_p6A5_fastqc.zip' - Bad zip file
[2018-09-11 08:18:30,671] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error:
File is not a zip file
[2018-09-11 08:18:30,783] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H55FTAFXY_n01_p6A11_fastqc.zip' - Bad zip file
[2018-09-11 08:18:30,783] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error:
File is not a zip file
[2018-09-11 08:18:30,791] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H55FTAFXY_n01_p6A7_fastqc.zip' - Bad zip file
[2018-09-11 08:18:30,791] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error:
File is not a zip file
[2018-09-11 08:18:30,916] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H55FTAFXY_n01_p6A12_fastqc.zip' - Bad zip file
[2018-09-11 08:18:30,916] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error:
File is not a zip file
[2018-09-11 08:18:30,932] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H55FTAFXY_n01_p6A4_fastqc.zip' - Bad zip file
[2018-09-11 08:18:30,932] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error:
File is not a zip file
[2018-09-11 08:18:31,164] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H55FTAFXY_n01_time2p6A1_fastqc.zip' - Bad zip file
[2018-09-11 08:18:31,164] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error:
File is not a zip file
[2018-09-11 08:18:31,207] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H55FTAFXY_n01_p6A10_fastqc.zip' - Bad zip file
[2018-09-11 08:18:31,207] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error:
File is not a zip file
[2018-09-11 08:18:31,208] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H55FTAFXY_n01_p6A3_fastqc.zip' - Bad zip file
[2018-09-11 08:18:31,208] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error:
File is not a zip file
[2018-09-11 08:18:31,523] multiqc.modules.fastqc.fastqc [WARNING] Couldn't read 'H55FTAFXY_n01_p6G7_fastqc.zip' - Bad zip file
[2018-09-11 08:18:31,523] multiqc.modules.fastqc.fastqc [DEBUG ] Bad zip file error:
File is not a zip file
[2018-09-11 08:18:31,878] multiqc.modules.fastqc.fastqc [INFO ] Found 182 reports
[2018-09-11 08:18:55,637] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/H55FTAFXY/merged',)
[2018-09-11 08:18:55,841] multiqc [INFO ] Report : multiqc_report.html
[2018-09-11 08:18:55,842] multiqc [INFO ] Data : multiqc_data
[2018-09-11 08:18:55,842] multiqc [DEBUG ] Moving data file from '/state/partition1/job-8578075/tmpLTP5Mq/multiqc_data/multiqc_sources.txt' to '/beegfs/mk5636/logs/html/H55FTAFXY/merged/multiqc_data'
[2018-09-11 08:18:55,844] multiqc [DEBUG ] Moving data file from '/state/partition1/job-8578075/tmpLTP5Mq/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/beegfs/mk5636/logs/html/H55FTAFXY/merged/multiqc_data'
[2018-09-11 08:18:55,852] multiqc [DEBUG ] Moving data file from '/state/partition1/job-8578075/tmpLTP5Mq/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/beegfs/mk5636/logs/html/H55FTAFXY/merged/multiqc_data'
[2018-09-11 08:18:55,854] multiqc [DEBUG ] Moving data file from '/state/partition1/job-8578075/tmpLTP5Mq/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/beegfs/mk5636/logs/html/H55FTAFXY/merged/multiqc_data'
[2018-09-11 08:18:55,856] multiqc [DEBUG ] Moving data file from '/state/partition1/job-8578075/tmpLTP5Mq/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/beegfs/mk5636/logs/html/H55FTAFXY/merged/multiqc_data'
[2018-09-11 08:18:55,858] multiqc [DEBUG ] Moving data file from '/state/partition1/job-8578075/tmpLTP5Mq/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/beegfs/mk5636/logs/html/H55FTAFXY/merged/multiqc_data'
[2018-09-11 08:18:55,859] multiqc [DEBUG ] Moving data file from '/state/partition1/job-8578075/tmpLTP5Mq/multiqc_data/mqc_fastqc_overrepresented_sequencesi_plot_1.txt' to '/beegfs/mk5636/logs/html/H55FTAFXY/merged/multiqc_data'
[2018-09-11 08:18:55,861] multiqc [DEBUG ] Moving data file from '/state/partition1/job-8578075/tmpLTP5Mq/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/beegfs/mk5636/logs/html/H55FTAFXY/merged/multiqc_data'
[2018-09-11 08:18:55,863] multiqc [DEBUG ] Moving data file from '/state/partition1/job-8578075/tmpLTP5Mq/multiqc_data/multiqc_general_stats.txt' to '/beegfs/mk5636/logs/html/H55FTAFXY/merged/multiqc_data'
[2018-09-11 08:18:55,864] multiqc [DEBUG ] Moving data file from '/state/partition1/job-8578075/tmpLTP5Mq/multiqc_data/mqc_fastqc_adapter_content_plot_1.txt' to '/beegfs/mk5636/logs/html/H55FTAFXY/merged/multiqc_data'
[2018-09-11 08:18:55,866] multiqc [DEBUG ] Moving data file from '/state/partition1/job-8578075/tmpLTP5Mq/multiqc_data/multiqc_fastqc.txt' to '/beegfs/mk5636/logs/html/H55FTAFXY/merged/multiqc_data'
[2018-09-11 08:18:55,993] multiqc [INFO ] MultiQC complete