FastQCFastQC Report
Tue 11 Sep 2018
H55FTAFXY_n01_p7H5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH55FTAFXY_n01_p7H5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAAAAACACAGCAACAAATCTAGTGACCCTGTCGTTGCCGAAGTAGCG215.384615384615385No Hit
GACAAGCCCCTTCGTCTTACACTTCAGGATGTCTAAAAGATTGGTGGTAT17.6923076923076925No Hit
CATAAGGTCTCCAAGGTGAACAGCCTCTGGTCGAAGGAACAATGAAGGCC17.6923076923076925No Hit
TTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACA17.6923076923076925No Hit
GTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTC17.6923076923076925No Hit
ATCTCCGCCGGGCTCTGCCAAGTGTTAAGAAGAGGAATTGAACCTCTGAC17.6923076923076925No Hit
AAAGAGCACACGTCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17.6923076923076925No Hit
GCCTTGCGACCATACTCCCCCCGGAACCCAAAAACTTTGATTTCTCATAA17.6923076923076925No Hit
TGATAATACAGGCTCCAACTGAACTGGCTTAACAATAAAAGTAATGAGAT17.6923076923076925No Hit
GCTAGAAAGACAAAATAAAAGAGACAATGATCAACAAAAAACAAAAAACA17.6923076923076925No Hit
GCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGA17.6923076923076925No Hit
ACCCGATAGCACTCGCGTCCGAGCTCCAGCTATCCTGAGGGATACTTCGG17.6923076923076925No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)