FastQCFastQC Report
Tue 11 Sep 2018
H55FTAFXY_n01_p6E12.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH55FTAFXY_n01_p6E12.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCATGAGCTTAAGGTGAAGGATGACAAAACTCTTCTCTTCGGTGAGAAG19.090909090909092No Hit
CCGACACAATGCCGGTGATCGAAGACTCTGAAAAGCTTCAACTTTTTGCC19.090909090909092No Hit
GGGACATTCTCTTAACCCTCTTGGTGAATGCGTCATTGAAACGCCATTAT19.090909090909092No Hit
GGCTTTACCTTGGTGCTTAAAGACTGGAGTTTTAACGTCTCCGGCCGCCG19.090909090909092No Hit
GTTCGGGGGCGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCAT19.090909090909092No Hit
TCCCAGTTGAGATCGGAAGAGCACACGTCTCGGAAGAGCACACGTCTCGG19.090909090909092Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
ATTGTGACATTGCAGAGCTTGCTGAAGACTATTTGGTAGAACTTGTAGCT19.090909090909092No Hit
GGCTCAACAAAGCAGCCGACACGTCCTACCTATTTAAAGTTTGAGAATAG19.090909090909092No Hit
CGTCTGGGGTGCTCTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG19.090909090909092No Hit
CCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAA19.090909090909092No Hit
CATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGA19.090909090909092No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)