H3WGNAFXY_n02_VGT0_3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3WGNAFXY_n02_VGT0_3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4928912
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	213329	4.3281154137059055	No Hit
TCCAGCATTAGAGGTAACAACTAGAGTACAATTTTTTCCAATAGAATCAC	13425	0.27237248301450706	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACGTCCTGGTGTAGATC	6954	0.14108590293354803	Illumina Single End PCR Primer 1 (97% over 34bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG	6732	0.13658186634291705	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG	5924	0.12018879622926926	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTAGAGT	2170	51.441017	21
CCAATAG	2245	48.953575	38
ACTAGAG	2440	46.322426	20
AGAGGTA	2620	45.008904	10
AACTAGA	2540	43.533894	19
TAGAGGT	2715	43.43973	9
TAGATCT	1335	42.21218	45
CAACTAG	2635	41.83157	18
ATTAGAG	2905	40.72359	7
CAATAGA	2720	40.533375	39
GGTGGTC	1460	40.037777	53
CGGTGGT	1470	39.28918	52
TAGAATC	2780	39.28245	42
GGTAACA	2965	39.180103	13
TAGAGTA	2880	38.883244	22
GAGGTAA	3090	38.1625	11
TCGGTGG	1505	38.142513	51
GTACAAT	2975	37.761143	26
AGAGTAC	2945	37.668945	23
GTGGTCG	1580	37.440018	54