H3WGNAFXY_n02_OAT2_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3WGNAFXY_n02_OAT2_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3021358
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	215890	7.145462404653802	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGG	12510	0.41405222419852267	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG	5188	0.1717108664382043	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATC	4320	0.14298206303258337	Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG	3932	0.1301401555194717	No Hit
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	3671	0.1215016558779198	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGG	3417	0.11309484013480031	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT	3267	0.10813018516839118	No Hit
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	3249	0.10753442657242206	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG	3134	0.10372819109817506	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGG	3041	0.1006501050190014	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGGTGG	890	48.37233	51
CGGTGGT	910	48.08005	52
GGTGGTC	935	46.045776	53
GTAGATC	1030	43.49869	44
TAGATCT	1070	40.891186	45
GTGGTCG	1085	40.325203	54
GGTCGCC	1125	39.822834	56
GTGTAGA	1205	38.631298	42
AGTGTCT	1175	37.832874	29
GGAAAAA	25895	37.58411	70
TGTGTAG	1195	37.490116	41
ACTAGAG	690	37.020363	20
GAGTGTC	1240	36.68804	28
CGTGTAG	1320	36.051613	16
CTCGGTG	1205	36.017746	50
AGAGTGT	1315	35.66004	27
AGAGTAC	715	35.238297	23
GTACAAT	730	34.994747	26
TGGTCGC	1325	34.869038	55
TAGGGAA	1360	34.734554	20