H3WGNAFXY_n01_79T1_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3WGNAFXY_n01_79T1_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3301804
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTAT	121238	3.6718714981264786	TruSeq Adapter, Index 7 (97% over 38bp)
GAAAAACAAAAAAAGGGAGGATTCAATTATGAAAAAAGCTGTCATTGTAG	14624	0.44290939135091	No Hit
AAAAAAGGGAGGATTCAATTATGAAAAAAGCTGTCATTGTAGAAAACAAA	8141	0.24656218237060712	No Hit
GGAGGATTCAATTATGAAAAAAGCTGTCATTGTAGAAAACAAAGGTTGTG	6571	0.1990124186656749	No Hit
AAAAAAAGGGAGGATTCAATTATGAAAAAAGCTGTCATTGTAGAAAACAA	5442	0.16481898986130006	No Hit
CAATTATGAAAAAAGCTGTCATTGTAGAAAACAAAGGTTGTGCAACATGC	5235	0.1585496898059364	No Hit
TAGACCTGTTGCACCGGCAATTTCAAAATCAGGGATAGGACCGTCCACTA	4934	0.14943346122301626	No Hit
GGCAATTTCAAAATCAGGGATAGGACCGTCCACTAGACAAGCGGCTCCGA	4841	0.14661681916915723	No Hit
GAAAAAAGCTGTCATTGTAGAAAACAAAGGTTGTGCAACATGCTCGATCG	4370	0.13235189005767756	No Hit
ACCGAATAGACCTGTTGCACCGGCAATTTCAAAATCAGGGATAGGACCGT	3511	0.10633580915160319	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTCACG	13880	65.07896	28
ACTCCAG	14220	63.700985	23
GTATGCC	14125	63.583305	47
GTCACGA	14235	63.406807	29
GAACTCC	14295	63.317806	21
ACACGTC	14365	63.27249	13
GCACACG	14405	63.193016	11
CAGTCAC	14315	63.174694	27
CTCCAGT	14370	62.938625	24
CATCTCG	13855	62.863373	41
TCGTATG	14290	62.750217	45
CACACGT	14495	62.729164	12
CACGTCT	14520	62.52475	14
TCCAGTC	14460	62.450066	25
CGAGATT	14450	62.41778	33
AGCACAC	14580	62.362522	10
CGTATGC	14420	62.281593	46
TGAACTC	14585	62.13082	20
CCAGTCA	14605	61.85402	26
GCCGTCT	14450	61.568176	51