MultiQC Report

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

General Statistics

Showing ¹⁹⁴/₁₉₄ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
H3VNWAFXY_n01_adR3wtZT14s1	18.7%	52%	76	17%	0.2
H3VNWAFXY_n01_adR3wtZT14s10	35.7%	51%	76	25%	0.7
H3VNWAFXY_n01_adR3wtZT14s11	48.4%	53%	76	33%	0.9
H3VNWAFXY_n01_adR3wtZT14s12	48.0%	55%	76	25%	1.0
H3VNWAFXY_n01_adR3wtZT14s13	56.0%	52%	76	25%	1.1
H3VNWAFXY_n01_adR3wtZT14s14	43.1%	53%	76	17%	1.0
H3VNWAFXY_n01_adR3wtZT14s15	42.3%	55%	76	25%	0.7
H3VNWAFXY_n01_adR3wtZT14s16	26.4%	46%	76	25%	0.1
H3VNWAFXY_n01_adR3wtZT14s17	51.9%	46%	76	33%	0.1
H3VNWAFXY_n01_adR3wtZT14s18	45.9%	54%	76	33%	0.7
H3VNWAFXY_n01_adR3wtZT14s19	42.1%	55%	76	33%	0.8
H3VNWAFXY_n01_adR3wtZT14s2	37.8%	52%	76	25%	0.3
H3VNWAFXY_n01_adR3wtZT14s20	33.0%	55%	76	17%	0.5
H3VNWAFXY_n01_adR3wtZT14s21	51.2%	52%	76	33%	0.8
H3VNWAFXY_n01_adR3wtZT14s22	34.1%	51%	76	33%	0.5
H3VNWAFXY_n01_adR3wtZT14s23	37.0%	53%	76	25%	0.2
H3VNWAFXY_n01_adR3wtZT14s24	62.5%	48%	76	25%	0.7
H3VNWAFXY_n01_adR3wtZT14s25	70.1%	55%	76	50%	0.0
H3VNWAFXY_n01_adR3wtZT14s26	39.0%	51%	76	25%	0.6
H3VNWAFXY_n01_adR3wtZT14s27	34.2%	51%	76	25%	0.4
H3VNWAFXY_n01_adR3wtZT14s28	39.1%	53%	76	33%	0.5
H3VNWAFXY_n01_adR3wtZT14s29	46.3%	49%	76	17%	0.5
H3VNWAFXY_n01_adR3wtZT14s3	51.5%	53%	76	42%	1.4
H3VNWAFXY_n01_adR3wtZT14s30	40.9%	50%	76	17%	0.4
H3VNWAFXY_n01_adR3wtZT14s31	27.7%	54%	76	25%	0.2
H3VNWAFXY_n01_adR3wtZT14s32	49.9%	46%	76	33%	0.7
H3VNWAFXY_n01_adR3wtZT14s33	31.0%	51%	76	25%	0.6
H3VNWAFXY_n01_adR3wtZT14s34	43.7%	50%	76	25%	0.5
H3VNWAFXY_n01_adR3wtZT14s35	31.9%	52%	76	25%	0.4
H3VNWAFXY_n01_adR3wtZT14s36	33.7%	52%	76	25%	0.5
H3VNWAFXY_n01_adR3wtZT14s37	31.1%	52%	76	25%	0.5
H3VNWAFXY_n01_adR3wtZT14s38	45.6%	51%	76	25%	0.6
H3VNWAFXY_n01_adR3wtZT14s39	26.0%	53%	76	17%	0.2
H3VNWAFXY_n01_adR3wtZT14s4	53.7%	56%	76	33%	1.2
H3VNWAFXY_n01_adR3wtZT14s40	41.4%	52%	76	25%	0.6
H3VNWAFXY_n01_adR3wtZT14s41	28.7%	54%	76	17%	0.4
H3VNWAFXY_n01_adR3wtZT14s42	25.6%	54%	76	17%	0.3
H3VNWAFXY_n01_adR3wtZT14s43	37.3%	50%	76	25%	0.4
H3VNWAFXY_n01_adR3wtZT14s44	24.9%	54%	76	17%	0.3
H3VNWAFXY_n01_adR3wtZT14s45	30.1%	55%	76	17%	0.3
H3VNWAFXY_n01_adR3wtZT14s46	25.4%	54%	76	17%	0.3
H3VNWAFXY_n01_adR3wtZT14s47	50.5%	48%	76	33%	0.2
H3VNWAFXY_n01_adR3wtZT14s48	38.1%	50%	76	25%	0.5
H3VNWAFXY_n01_adR3wtZT14s49	36.7%	53%	76	17%	0.5
H3VNWAFXY_n01_adR3wtZT14s5	55.9%	54%	76	42%	1.5
H3VNWAFXY_n01_adR3wtZT14s50	24.1%	55%	76	17%	0.2
H3VNWAFXY_n01_adR3wtZT14s51	51.8%	49%	76	33%	0.5
H3VNWAFXY_n01_adR3wtZT14s52	32.2%	53%	76	17%	0.3
H3VNWAFXY_n01_adR3wtZT14s53	52.4%	47%	76	33%	0.4
H3VNWAFXY_n01_adR3wtZT14s54	26.3%	53%	76	17%	0.2
H3VNWAFXY_n01_adR3wtZT14s55	39.9%	49%	76	25%	0.4
H3VNWAFXY_n01_adR3wtZT14s56	35.9%	54%	76	17%	0.7
H3VNWAFXY_n01_adR3wtZT14s57	42.5%	51%	76	25%	0.2
H3VNWAFXY_n01_adR3wtZT14s58	35.2%	52%	76	17%	0.2
H3VNWAFXY_n01_adR3wtZT14s59	31.6%	54%	76	25%	0.4
H3VNWAFXY_n01_adR3wtZT14s6	42.2%	54%	76	25%	0.5
H3VNWAFXY_n01_adR3wtZT14s60	33.7%	56%	76	25%	0.6
H3VNWAFXY_n01_adR3wtZT14s61	35.2%	52%	76	17%	0.4
H3VNWAFXY_n01_adR3wtZT14s62	33.4%	53%	76	17%	0.2
H3VNWAFXY_n01_adR3wtZT14s63	26.8%	53%	76	17%	0.4
H3VNWAFXY_n01_adR3wtZT14s64	41.1%	51%	76	25%	0.8
H3VNWAFXY_n01_adR3wtZT14s65	39.3%	51%	76	17%	0.2
H3VNWAFXY_n01_adR3wtZT14s66	32.9%	52%	76	25%	0.2
H3VNWAFXY_n01_adR3wtZT14s67	32.9%	52%	76	25%	0.5
H3VNWAFXY_n01_adR3wtZT14s68	36.9%	54%	76	17%	0.7
H3VNWAFXY_n01_adR3wtZT14s69	35.4%	54%	76	33%	0.3
H3VNWAFXY_n01_adR3wtZT14s7	31.5%	55%	76	25%	0.2
H3VNWAFXY_n01_adR3wtZT14s70	32.6%	54%	76	17%	0.4
H3VNWAFXY_n01_adR3wtZT14s71	36.1%	50%	76	25%	0.4
H3VNWAFXY_n01_adR3wtZT14s72	40.7%	51%	76	25%	0.8
H3VNWAFXY_n01_adR3wtZT14s73	36.6%	52%	76	25%	0.4
H3VNWAFXY_n01_adR3wtZT14s74	30.4%	52%	76	25%	0.3
H3VNWAFXY_n01_adR3wtZT14s75	38.7%	52%	76	17%	0.5
H3VNWAFXY_n01_adR3wtZT14s76	37.4%	50%	76	17%	0.5
H3VNWAFXY_n01_adR3wtZT14s77	37.2%	51%	76	25%	0.3
H3VNWAFXY_n01_adR3wtZT14s78	32.5%	52%	76	25%	0.5
H3VNWAFXY_n01_adR3wtZT14s79	25.0%	54%	76	25%	0.3
H3VNWAFXY_n01_adR3wtZT14s8	32.0%	56%	76	42%	0.0
H3VNWAFXY_n01_adR3wtZT14s80	45.6%	51%	76	17%	0.7
H3VNWAFXY_n01_adR3wtZT14s81	36.8%	50%	76	33%	0.6
H3VNWAFXY_n01_adR3wtZT14s82	42.3%	51%	76	25%	0.5
H3VNWAFXY_n01_adR3wtZT14s83	40.1%	51%	76	17%	0.4
H3VNWAFXY_n01_adR3wtZT14s84	47.4%	51%	76	25%	0.7
H3VNWAFXY_n01_adR3wtZT14s85	34.4%	55%	76	17%	0.5
H3VNWAFXY_n01_adR3wtZT14s86	35.3%	54%	76	33%	0.6
H3VNWAFXY_n01_adR3wtZT14s87	53.5%	49%	76	42%	0.9
H3VNWAFXY_n01_adR3wtZT14s88	42.7%	53%	76	25%	0.3
H3VNWAFXY_n01_adR3wtZT14s89	55.7%	46%	76	42%	0.6
H3VNWAFXY_n01_adR3wtZT14s9	32.8%	53%	76	25%	1.0
H3VNWAFXY_n01_adR3wtZT14s90	32.8%	54%	76	17%	0.6
H3VNWAFXY_n01_adR3wtZT14s91	26.8%	51%	76	25%	0.5
H3VNWAFXY_n01_adR3wtZT14s92	29.2%	55%	76	17%	0.5
H3VNWAFXY_n01_adR3wtZT14s93	44.3%	52%	76	25%	0.8
H3VNWAFXY_n01_adR3wtZT14s94	33.4%	53%	76	25%	0.6
H3VNWAFXY_n01_adR3wtZT14s95	35.8%	55%	76	17%	0.7
H3VNWAFXY_n01_adR3wtZT14s96	1.7%	50%	76	42%	0.0
H3VNWAFXY_n01_undetermined	75.3%	46%	76	25%	8.6
H3VNWAFXY_n02_adR3wtZT14s1	37.7%	52%	76	33%	0.2
H3VNWAFXY_n02_adR3wtZT14s10	44.5%	51%	76	33%	0.7
H3VNWAFXY_n02_adR3wtZT14s11	55.8%	52%	76	42%	0.9
H3VNWAFXY_n02_adR3wtZT14s12	54.8%	54%	76	42%	1.0
H3VNWAFXY_n02_adR3wtZT14s13	64.2%	52%	76	33%	1.1
H3VNWAFXY_n02_adR3wtZT14s14	53.2%	53%	76	50%	1.0
H3VNWAFXY_n02_adR3wtZT14s15	48.9%	54%	76	42%	0.7
H3VNWAFXY_n02_adR3wtZT14s16	34.2%	45%	76	42%	0.1
H3VNWAFXY_n02_adR3wtZT14s17	52.1%	49%	76	42%	0.1
H3VNWAFXY_n02_adR3wtZT14s18	52.3%	53%	76	42%	0.7
H3VNWAFXY_n02_adR3wtZT14s19	49.2%	54%	76	42%	0.8
H3VNWAFXY_n02_adR3wtZT14s2	51.7%	52%	76	42%	0.3
H3VNWAFXY_n02_adR3wtZT14s20	46.6%	55%	76	33%	0.5
H3VNWAFXY_n02_adR3wtZT14s21	56.2%	52%	76	42%	0.8
H3VNWAFXY_n02_adR3wtZT14s22	46.3%	51%	76	33%	0.5
H3VNWAFXY_n02_adR3wtZT14s23	42.5%	52%	76	33%	0.2
H3VNWAFXY_n02_adR3wtZT14s24	71.0%	48%	76	50%	0.7
H3VNWAFXY_n02_adR3wtZT14s25	71.6%	86%	76	42%	0.0
H3VNWAFXY_n02_adR3wtZT14s26	50.1%	50%	76	42%	0.6
H3VNWAFXY_n02_adR3wtZT14s27	46.3%	50%	76	33%	0.4
H3VNWAFXY_n02_adR3wtZT14s28	48.8%	52%	76	33%	0.5
H3VNWAFXY_n02_adR3wtZT14s29	56.4%	49%	76	42%	0.5
H3VNWAFXY_n02_adR3wtZT14s3	56.1%	53%	76	42%	1.4
H3VNWAFXY_n02_adR3wtZT14s30	53.1%	50%	76	42%	0.4
H3VNWAFXY_n02_adR3wtZT14s31	37.4%	53%	76	33%	0.2
H3VNWAFXY_n02_adR3wtZT14s32	61.7%	46%	76	50%	0.7
H3VNWAFXY_n02_adR3wtZT14s33	41.2%	51%	76	50%	0.6
H3VNWAFXY_n02_adR3wtZT14s34	53.2%	49%	76	42%	0.5
H3VNWAFXY_n02_adR3wtZT14s35	44.1%	52%	76	33%	0.4
H3VNWAFXY_n02_adR3wtZT14s36	44.6%	51%	76	33%	0.5
H3VNWAFXY_n02_adR3wtZT14s37	42.7%	52%	76	33%	0.5
H3VNWAFXY_n02_adR3wtZT14s38	56.3%	51%	76	42%	0.6
H3VNWAFXY_n02_adR3wtZT14s39	32.9%	53%	76	42%	0.2
H3VNWAFXY_n02_adR3wtZT14s4	55.6%	55%	76	50%	1.2
H3VNWAFXY_n02_adR3wtZT14s40	53.9%	52%	76	42%	0.6
H3VNWAFXY_n02_adR3wtZT14s41	41.3%	54%	76	33%	0.4
H3VNWAFXY_n02_adR3wtZT14s42	38.1%	54%	76	33%	0.3
H3VNWAFXY_n02_adR3wtZT14s43	49.1%	50%	76	33%	0.4
H3VNWAFXY_n02_adR3wtZT14s44	38.5%	53%	76	33%	0.3
H3VNWAFXY_n02_adR3wtZT14s45	40.9%	55%	76	33%	0.3
H3VNWAFXY_n02_adR3wtZT14s46	38.9%	54%	76	33%	0.3
H3VNWAFXY_n02_adR3wtZT14s47	53.4%	48%	76	42%	0.2
H3VNWAFXY_n02_adR3wtZT14s48	50.3%	50%	76	50%	0.5
H3VNWAFXY_n02_adR3wtZT14s49	47.5%	53%	76	42%	0.5
H3VNWAFXY_n02_adR3wtZT14s5	59.5%	53%	76	58%	1.5
H3VNWAFXY_n02_adR3wtZT14s50	42.5%	55%	76	42%	0.2
H3VNWAFXY_n02_adR3wtZT14s51	61.0%	49%	76	42%	0.5
H3VNWAFXY_n02_adR3wtZT14s52	43.5%	52%	76	33%	0.3
H3VNWAFXY_n02_adR3wtZT14s53	61.2%	47%	76	42%	0.4
H3VNWAFXY_n02_adR3wtZT14s54	42.4%	53%	76	33%	0.2
H3VNWAFXY_n02_adR3wtZT14s55	50.9%	49%	76	42%	0.4
H3VNWAFXY_n02_adR3wtZT14s56	45.6%	54%	76	42%	0.7
H3VNWAFXY_n02_adR3wtZT14s57	47.4%	50%	76	33%	0.2
H3VNWAFXY_n02_adR3wtZT14s58	41.8%	52%	76	33%	0.2
H3VNWAFXY_n02_adR3wtZT14s59	43.0%	54%	76	33%	0.4
H3VNWAFXY_n02_adR3wtZT14s6	50.7%	53%	76	42%	0.5
H3VNWAFXY_n02_adR3wtZT14s60	42.3%	56%	76	33%	0.6
H3VNWAFXY_n02_adR3wtZT14s61	47.7%	52%	76	33%	0.4
H3VNWAFXY_n02_adR3wtZT14s62	48.7%	53%	76	33%	0.2
H3VNWAFXY_n02_adR3wtZT14s63	40.5%	52%	76	42%	0.4
H3VNWAFXY_n02_adR3wtZT14s64	50.4%	51%	76	42%	0.8
H3VNWAFXY_n02_adR3wtZT14s65	43.9%	51%	76	33%	0.2
H3VNWAFXY_n02_adR3wtZT14s66	39.6%	52%	76	33%	0.2
H3VNWAFXY_n02_adR3wtZT14s67	45.1%	52%	76	33%	0.5
H3VNWAFXY_n02_adR3wtZT14s68	45.3%	54%	76	33%	0.7
H3VNWAFXY_n02_adR3wtZT14s69	44.6%	53%	76	33%	0.3
H3VNWAFXY_n02_adR3wtZT14s7	36.5%	54%	76	42%	0.2
H3VNWAFXY_n02_adR3wtZT14s70	43.9%	54%	76	33%	0.4
H3VNWAFXY_n02_adR3wtZT14s71	47.8%	50%	76	33%	0.4
H3VNWAFXY_n02_adR3wtZT14s72	51.0%	51%	76	50%	0.8
H3VNWAFXY_n02_adR3wtZT14s73	46.5%	51%	76	33%	0.4
H3VNWAFXY_n02_adR3wtZT14s74	39.4%	52%	76	42%	0.3
H3VNWAFXY_n02_adR3wtZT14s75	49.4%	52%	76	33%	0.5
H3VNWAFXY_n02_adR3wtZT14s76	50.5%	50%	76	42%	0.5
H3VNWAFXY_n02_adR3wtZT14s77	45.7%	51%	76	33%	0.3
H3VNWAFXY_n02_adR3wtZT14s78	44.5%	52%	76	33%	0.5
H3VNWAFXY_n02_adR3wtZT14s79	37.0%	54%	76	33%	0.3
H3VNWAFXY_n02_adR3wtZT14s8	29.8%	57%	76	42%	0.0
H3VNWAFXY_n02_adR3wtZT14s80	52.6%	51%	76	42%	0.7
H3VNWAFXY_n02_adR3wtZT14s81	46.1%	50%	76	42%	0.6
H3VNWAFXY_n02_adR3wtZT14s82	52.2%	51%	76	33%	0.5
H3VNWAFXY_n02_adR3wtZT14s83	51.2%	50%	76	42%	0.4
H3VNWAFXY_n02_adR3wtZT14s84	54.2%	51%	76	42%	0.7
H3VNWAFXY_n02_adR3wtZT14s85	45.3%	55%	76	33%	0.5
H3VNWAFXY_n02_adR3wtZT14s86	42.9%	54%	76	33%	0.6
H3VNWAFXY_n02_adR3wtZT14s87	61.2%	49%	76	50%	0.9
H3VNWAFXY_n02_adR3wtZT14s88	47.6%	52%	76	42%	0.3
H3VNWAFXY_n02_adR3wtZT14s89	65.3%	46%	76	50%	0.6
H3VNWAFXY_n02_adR3wtZT14s9	40.9%	52%	76	50%	1.0
H3VNWAFXY_n02_adR3wtZT14s90	42.2%	54%	76	33%	0.6
H3VNWAFXY_n02_adR3wtZT14s91	41.4%	51%	76	33%	0.5
H3VNWAFXY_n02_adR3wtZT14s92	43.0%	55%	76	42%	0.5
H3VNWAFXY_n02_adR3wtZT14s93	53.3%	52%	76	42%	0.8
H3VNWAFXY_n02_adR3wtZT14s94	41.5%	53%	76	42%	0.6
H3VNWAFXY_n02_adR3wtZT14s95	43.9%	54%	76	33%	0.7
H3VNWAFXY_n02_adR3wtZT14s96	1.7%	46%	76	42%	0.0
H3VNWAFXY_n02_undetermined	74.4%	49%	76	42%	8.6

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

Demultiplexing Report

Demultiplexing Report
Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.

Showing ⁹⁷/₉₇ rows and ²/₂ columns.

Sample Name	Total Read Count	Portion (%)
undetermined_library	8,574,220	15.0
adR3wtZT14s1	214,359	0.4
adR3wtZT14s2	250,976	0.4
adR3wtZT14s3	1,375,826	2.4
adR3wtZT14s4	1,200,919	2.1
adR3wtZT14s5	1,542,775	2.7
adR3wtZT14s6	518,614	0.9
adR3wtZT14s7	173,191	0.3
adR3wtZT14s8	7,339	0.0
adR3wtZT14s9	969,400	1.7
adR3wtZT14s10	674,187	1.2
adR3wtZT14s11	944,270	1.7
adR3wtZT14s12	980,930	1.7
adR3wtZT14s13	1,102,360	1.9
adR3wtZT14s14	958,633	1.7
adR3wtZT14s15	692,991	1.2
adR3wtZT14s16	126,661	0.2
adR3wtZT14s17	62,174	0.1
adR3wtZT14s18	735,673	1.3
adR3wtZT14s19	818,627	1.4
adR3wtZT14s20	533,729	0.9
adR3wtZT14s21	757,190	1.3
adR3wtZT14s22	501,031	0.9
adR3wtZT14s23	211,164	0.4
adR3wtZT14s24	658,389	1.2
adR3wtZT14s25	6,659	0.0
adR3wtZT14s26	559,939	1.0
adR3wtZT14s27	402,778	0.7
adR3wtZT14s28	453,026	0.8
adR3wtZT14s29	541,440	0.9
adR3wtZT14s30	448,452	0.8
adR3wtZT14s31	246,698	0.4
adR3wtZT14s32	712,774	1.3
adR3wtZT14s33	605,903	1.1
adR3wtZT14s34	519,456	0.9
adR3wtZT14s35	377,547	0.7
adR3wtZT14s36	471,451	0.8
adR3wtZT14s37	456,334	0.8
adR3wtZT14s38	588,781	1.0
adR3wtZT14s39	158,714	0.3
adR3wtZT14s40	605,993	1.1
adR3wtZT14s41	442,991	0.8
adR3wtZT14s42	326,560	0.6
adR3wtZT14s43	413,764	0.7
adR3wtZT14s44	347,010	0.6
adR3wtZT14s45	328,688	0.6
adR3wtZT14s46	345,182	0.6
adR3wtZT14s47	219,000	0.4
adR3wtZT14s48	500,729	0.9
adR3wtZT14s49	452,734	0.8
adR3wtZT14s50	230,312	0.4
adR3wtZT14s51	519,948	0.9
adR3wtZT14s52	349,294	0.6
adR3wtZT14s53	437,001	0.8
adR3wtZT14s54	221,717	0.4
adR3wtZT14s55	393,095	0.7
adR3wtZT14s56	671,505	1.2
adR3wtZT14s57	225,667	0.4
adR3wtZT14s58	210,194	0.4
adR3wtZT14s59	396,164	0.7
adR3wtZT14s60	637,470	1.1
adR3wtZT14s61	426,794	0.7
adR3wtZT14s62	239,670	0.4
adR3wtZT14s63	375,356	0.7
adR3wtZT14s64	779,275	1.4
adR3wtZT14s65	199,100	0.3
adR3wtZT14s66	208,392	0.4
adR3wtZT14s67	524,176	0.9
adR3wtZT14s68	662,058	1.2
adR3wtZT14s69	327,162	0.6
adR3wtZT14s70	356,691	0.6
adR3wtZT14s71	396,289	0.7
adR3wtZT14s72	833,514	1.5
adR3wtZT14s73	358,157	0.6
adR3wtZT14s74	255,566	0.4
adR3wtZT14s75	497,759	0.9
adR3wtZT14s76	454,853	0.8
adR3wtZT14s77	269,626	0.5
adR3wtZT14s78	481,927	0.8
adR3wtZT14s79	335,748	0.6
adR3wtZT14s80	719,193	1.3
adR3wtZT14s81	635,479	1.1
adR3wtZT14s82	479,326	0.8
adR3wtZT14s83	443,253	0.8
adR3wtZT14s84	688,916	1.2
adR3wtZT14s85	520,653	0.9
adR3wtZT14s86	575,690	1.0
adR3wtZT14s87	897,255	1.6
adR3wtZT14s88	317,955	0.6
adR3wtZT14s89	567,849	1.0
adR3wtZT14s90	571,872	1.0
adR3wtZT14s91	529,460	0.9
adR3wtZT14s92	531,411	0.9
adR3wtZT14s93	823,126	1.4
adR3wtZT14s94	581,194	1.0
adR3wtZT14s95	699,888	1.2
adR3wtZT14s96	175.0	0.0

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Visible	Group	Column	Description	ID	Scale
\|\|			Total Read Count	Total Read Count	`Total Read Count`	None
\|\|			Portion (%)	Portion (%)	`Portion (%)`	None

Sample Name	Total # of Single-End Reads	Total # PF Reads	% Undetermined	% PhiX Aligned
4.0	60134877.0	56,975,406	15.1	9.2

Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	% Undetermined	% Undetermined	`% Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Quality Histograms

The mean quality value across each base position in the read. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

Click a heatmap row to see a line plot for that dataset.

rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (76bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

v1.0.dev0

MultiQC Toolbox

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About MultiQC

General Statistics

Demultiplexing Report

Run Statistics

FastQC

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

rollover for sample name

Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Toggle navigation v1.0.dev0

MultiQC Toolbox

Apply Highlight Samples

Apply Rename Samples

Apply Show / Hide Samples

Export Plots

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About MultiQC

General Statistics

General Statistics: Columns

Demultiplexing Report

Table Vpjh: Columns

Run Statistics

Table Uisv: Columns

FastQC

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

rollover for sample name

Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

v1.0.dev0

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Show / Hide Samples