FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_AH9724I1-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_AH9724I1-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7225446
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC5350.010.50974844
GCGTCGT7900.08.2585412
AGCGTCG8500.07.67579711
GTGTAGG6754.2200554E-107.66567617
CTCGGTG6255.9699232E-97.55792438
GTCGCCG7454.4383341E-107.245127745
CGTGTAG6903.9881343E-86.84694116
AGATCGG9656.002665E-116.54360441
TGGTCGC9158.54925E-106.390890643
GTGGTCG7451.7164348E-76.339925342
GTCGTGT8353.5308403E-86.196846514
GTAGGGA9002.5751433E-85.99914119
GAGCGTC11905.2750693E-115.861033410
AGAGCGT12108.185452E-115.7645969
GGTGGTC9601.0062104E-75.62310541
GATCGGA10907.510607E-95.5819512
CGTCGTG12958.731149E-115.559319513
ATCTCGG9051.0925796E-65.46818736
AAGAGCG12451.0186341E-95.4224518
TGTAGGG8904.636182E-65.308265718
Produced by FastQC (version 0.11.5)