FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_AH9724I-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_AH9724I-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5852894
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC7350.032.74224544
GTCGCCG8750.026.73121545
GCGTCGT10500.026.13907412
AGCGTCG10500.025.49696411
GTGGTCG9700.025.2740142
CGTGTAG10050.024.40007816
CTCGGTG7750.024.37918938
TGGTCGC10650.023.01991743
GTGTAGG10600.022.92179917
GTCGTGT11650.022.78678914
ATCTCGG9000.021.74313436
AGATCGG12350.021.5517961
TGTAGGG11650.020.66259818
GTAGGGA11700.020.18955819
GGTGGTC12000.019.86787641
GATCTCG10100.019.15302335
CGTCGTG14450.018.99443813
TCGGAAG14300.018.7463874
TCGTGTA14200.018.69495615
GATCGGA14000.018.6743222
Produced by FastQC (version 0.11.5)