FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_AH9724A1-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_AH9724A1-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6723280
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC5700.017.36123844
GTCGCCG7050.014.03653845
CGTGTAG7100.013.94204616
AGCGTCG7950.013.58373511
GTCGTGT8600.013.34177414
GTGTAGG8850.011.94785617
GCGTCGT9100.011.86684412
TGTAGGG8850.011.43943718
GTGGTCG8750.011.31002842
GAGCGTC10350.011.30370910
CTCGGTG8000.010.96543838
ATCTCGG7850.010.8890836
GTAGGGA9700.010.66886519
TCGTGTA10550.010.66227115
TGGTCGC8650.010.66064743
GATCGGA10800.010.0147152
CGTCGTG11100.09.72881913
GATCTCG9300.09.19138835
AGAGCGT12000.09.187469
AGATCGG12000.09.0209081
Produced by FastQC (version 0.11.5)