FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_AH9724A-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_AH9724A-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7803444
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC5700.015.3866144
GTCGCCG6800.011.5746245
GTGGTCG8450.011.44417442
CGTGTAG9050.011.43519216
AGCGTCG9550.011.07270511
CTCGGTG8100.010.82893338
GCGTCGT9600.010.54603912
GTAGGGA10250.010.31612319
TGGTCGC8900.010.10728143
GATCGGA11300.09.7725952
TGTAGGG11350.09.71276218
GAGCGTC11250.09.59973210
GTGTAGG10900.09.28813617
GTCGTGT10700.09.25142614
ATCTCGG8300.09.21430636
CGTCGTG11250.08.99928813
AGATCGG13200.08.3729271
GATCTCG9900.08.17964835
AGAGCGT13200.08.0117059
TCGTGTA12700.07.794408315
Produced by FastQC (version 0.11.5)