FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_AH9723A-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_AH9723A-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6209181
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC4300.019.35215444
AGCGTCG7100.012.67541411
GCGTCGT7300.012.63593912
CTCGGTG6450.012.55406438
GTCGCCG6400.012.29910845
GTGGTCG6750.011.66165842
TGGTCGC6950.011.3260743
GTCGTGT8750.011.05604814
CGTGTAG7850.010.89046616
GATCGGA8600.010.74369052
CGTCGTG9650.010.02515513
ATCTCGG7950.09.62006136
GAGCGTC10000.09.44967310
GTGTAGG8900.09.35293117
GTAGGGA9350.09.14325919
TCGTGTA11400.09.07790315
AGATCGG10200.09.0653581
TGTAGGG10300.08.30001518
AGAGCGT11200.08.2367889
GAGTGTA11250.08.19806528
Produced by FastQC (version 0.11.5)