FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_AH9722B-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_AH9722B-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7754210
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC9400.027.51374244
GCGTCGT13450.022.9157912
AGCGTCG13700.022.49878111
CGTGTAG12300.022.13180516
GTGGTCG12050.021.65019442
GTCGCCG11050.021.36983145
GATCGGA14750.021.0841272
GTCGTGT14650.020.27154514
TGGTCGC12550.020.24976543
AGATCGG15250.019.9659141
GTGTAGG13950.019.83686617
CTCGGTG11050.019.3367338
TGTAGGG14600.019.26153618
GTAGGGA15300.018.08597219
GAGCGTC16800.018.08007810
CGTCGTG16850.018.02572813
ATCTCGG13150.016.9343136
TCGTGTA18700.015.880774515
GAGTGTA17300.015.86271228
AGAGCGT19400.015.6578849
Produced by FastQC (version 0.11.5)