FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_AH9722A-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_AH9722A-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7827782
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC12900.031.55351844
GTCGCCG14000.028.27061545
AGCGTCG17350.026.84171111
CTCGGTG13450.026.2542838
GCGTCGT17550.026.02255412
CGTGTAG16900.024.89333716
GTCGTGT18450.024.50928914
GTGGTCG16650.024.44843342
GAGCGTC19250.024.07614310
ATCTCGG15050.023.76384436
TGGTCGC16950.023.75019843
TGTAGGG17900.023.62818118
GTGTAGG18000.023.4970617
GATCGGA20550.023.3615572
GTAGGGA18600.023.3432619
CGTCGTG19900.023.06273813
AGATCGG21350.022.1858121
AGAGCGT21800.021.8807969
TCGTGTA20800.021.6320515
GATCTCG17200.020.7941635
Produced by FastQC (version 0.11.5)