FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_AH6978I-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_AH6978I-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4896302
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC4150.016.25903144
GTCGCCG4350.016.02837445
GATCGGA5900.014.1306322
AGCGTCG5650.013.9367311
GCGTCGT5950.013.61187512
GTGGTCG5450.012.38035142
GAGCGTC6400.011.95211310
TGGTCGC5550.011.75215843
AGATCGG7600.011.5721521
GTCGTGT6600.011.24858814
CTCGGTG5400.011.24686338
ATCTCGG5750.010.5629236
GATCTCG6100.010.32583435
CGTCGTG7650.010.2929313
CGTGTAG6150.010.24251216
GGTGGTC7400.09.72612341
GTGTAGG6300.09.64164617
AGAGCGT7950.09.6225159
TCGTGTA8650.08.8428215
AAGAGCG9200.08.3159588
Produced by FastQC (version 0.11.5)