FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_AH6978A-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_AH6978A-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7778934
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC14950.032.1912944
GTCGCCG16000.028.81374445
GTGGTCG17650.028.28798742
GCGTCGT19750.028.1364212
AGCGTCG20000.027.89810211
TGGTCGC17250.027.76964443
CTCGGTG15900.027.1604538
CGTGTAG18450.027.06976116
GAGCGTC21300.026.40699410
GTGTAGG18800.026.32630217
GTCGTGT20950.026.20228814
GATCGGA21150.026.0001742
GTAGGGA19950.025.25997519
TGTAGGG19700.025.23793818
CGTCGTG22050.025.20155713
ATCTCGG16800.025.03859136
AGATCGG22650.024.5997941
TCGTGTA22550.024.3429915
AGAGCGT23650.023.59469
GATCTCG17250.023.47288935
Produced by FastQC (version 0.11.5)