FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_AH9724I1-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_AH9724I1-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7225446
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG8650.09.62391411
AGTCACG9250.08.75642628
CGGGGGT3104.7399062E-58.70934944
CGTTTCG9000.08.24968833
ACACGTC10000.07.874702513
ACGTCTG9750.07.845857615
GTCACGT10900.07.63732629
CACACGT10550.07.464172412
CACGTCT11200.07.03098414
CGTCTGA12300.06.76808316
TCCAGTC14100.06.701874325
AGCACAC11900.06.61739710
GTTTCGG12050.06.535022334
AGATCGG9656.366463E-116.53118851
CAGTCAC13350.06.40425227
GATCGGA12700.06.20334341
GAGCACA13150.06.15950549
TCGGAAG14200.05.8638343
GAACTCC13751.8189894E-125.727095621
TCGGGGG5150.00243094845.679396643
Produced by FastQC (version 0.11.5)