FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_AH9724A1-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_AH9724A1-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6723280
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG8350.014.28093912
CACGTGG8200.013.71903432
AGTCACG9100.011.86771929
ACGTGGC9650.011.42447233
CGTGGCC10450.010.76517534
GTCACGT11350.010.50624130
TCACGTG11350.010.50624131
AGATCGG10550.010.027151
ACACGTC11100.09.7293914
GATCGGA11600.09.6999582
CACACGT11400.09.67071513
ACGTCTG11800.09.34310216
CACGTCT11850.09.303472515
GGCCTTA12600.09.10682537
CGTCTGA12500.08.999886517
AGCACAC13650.08.40630111
TATCTCG10900.08.25659342
GAGCACA14550.07.88632310
GAACTCC15250.07.81957422
TCCAGTC15100.07.599072526
Produced by FastQC (version 0.11.5)