FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_AH9724A-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_AH9724A-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7803444
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG14300.019.03762211
ACACGTC16200.016.80470713
ACGTCTG16000.016.73352815
GTCACAC16050.016.5412229
CACGTCT16650.016.35052514
CGTCTGA16500.016.22645216
GATCGGA15850.016.0488361
CACACGT17850.014.99933812
TATCTCG17900.014.454576541
AGCACAC20800.013.73737310
TCCAGTC19700.013.59068325
CAGTCAC20100.013.32022127
GAGCACA20800.013.3047019
TCGTATG20450.012.76219145
CTCGTAT20500.012.73106444
CACACTG21250.012.70523931
GAACTCC21700.012.23440521
AGTCACA22700.012.19101428
AGAGCAC23050.012.1035878
CCAGTCA22750.012.06532526
Produced by FastQC (version 0.11.5)