FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_AH9722B-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_AH9722B-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7754210
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG27050.023.7884511
ACACGTC28300.022.9762313
ACGTCTG28950.022.22720715
GTCACAC28350.021.98336229
GATCGGA29350.021.8567811
CACACGT29850.021.55703712
CGTCTGA30200.021.38184416
CACGTCT30100.021.37799314
AGCACAC32400.019.99930210
CAGTCAC32650.019.29488827
ATCGGGG14950.019.11304740
AGTCACA33050.018.99328828
GAACTCC33450.018.90080821
CCAGTCA33600.018.81630926
TCCAGTC33650.018.7883525
GAGCACA34250.018.7876669
AGATCGG16900.018.5130331
TCGGAAG36350.018.0157013
AGAGCAC35850.017.9491658
AATCGGG19450.017.92996839
Produced by FastQC (version 0.11.5)