FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_AH9722A-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_AH9722A-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7827782
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG20900.023.1548291
GCACACG23950.019.91574512
GATCGGA26250.018.3465062
CACGTCT26450.018.20347615
ACACGTC26200.018.1195514
CACACGT26200.017.77605213
ACGTCTG27200.017.37078316
CGTCTGA28350.016.66614717
GAACTCC29750.016.10874422
AGCACAC29900.016.10307511
CAGTCAC29650.016.08708828
GAGCACA30100.015.771934510
TCCAGTC31300.015.45469226
AGTCACC31600.015.1655729
AGAGCAC31550.015.1183899
CCAGTCA32000.014.97600127
TCGGAAG33650.014.3786964
GTCTGAA34450.014.04165418
ACTCCAG35600.013.52477424
CCAGATC35450.013.45506734
Produced by FastQC (version 0.11.5)