FastQCFastQC Report
Thu 12 Jul 2018
H3TN2AFXY_n01_AH8643A1-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_AH8643A1-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8980173
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG47700.039.1025111
CACACGT51200.036.6931512
GTCACAC50850.036.37030429
ACACGTC51350.036.2352413
ACGTCTG51500.036.1733915
GATCGGA50500.035.9701041
CACGTCT51950.035.81674214
CGTCTGA52400.035.76697516
AGCACAC54050.034.67529710
CACACAG53800.034.54330431
GAGCACA56850.033.0861859
CAGTCAC56000.033.02553627
TCCAGTC56400.032.87109825
AGAGCAC57850.032.592048
CACAGTG57500.032.2422633
AGTCACA57900.032.1360928
GAACTCC58550.031.81793221
TCGGAAG60500.031.3572123
CCAGTCA59400.031.17306126
ACACAGT60650.030.75316232
Produced by FastQC (version 0.11.5)