FastQCFastQC Report
Thu 12 Jul 2018
H3TN2AFXY_n01_AH8038A-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_AH8038A-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11704144
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC14800.013.6820568
CCGATCT17550.011.5381439
ACGCTCT20600.010.5986251
CGCTCTT24100.09.2444592
CTTCCGA30100.06.9531516
TTCCGAT32500.06.78442867
GCACACG11351.8189894E-126.34338411
TCTTCCG42350.05.57957465
ACGTCTG14551.8189894E-125.566809715
CACACGT14102.910383E-115.42533612
ACACGTC14253.8198777E-115.368227513
CGATCTC14701.6370905E-115.35697210
CGATCTA14709.458745E-115.20391610
GCTCTTC50250.05.01585873
Produced by FastQC (version 0.11.5)