FastQCFastQC Report
Thu 12 Jul 2018
H3TN2AFXY_n01_AH7797A-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_AH7797A-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8973310
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG20650.027.0208511
ACACGTC21850.026.05172513
CACACGT22200.025.23560712
ACGTCTG23100.024.34980215
CACGTCT23900.023.62888514
GATCGGA24650.022.919531
CGTCTGA25700.022.32425116
AGCACAC26150.022.1980810
GAGCACA27500.021.190299
CAGTCAC26200.021.12522127
GAACTCC26450.021.09590721
TCCAGTC27200.020.34867125
TCACATG28950.019.50709330
CACATGT29150.019.37325331
AGTCACA29750.019.20941528
CGGGGGT4950.019.09024444
GTCACAT29700.019.0144929
ATCGGGG10950.018.90345242
CCAGTCA29900.018.73680726
TCGGAAG32150.018.3390673
Produced by FastQC (version 0.11.5)