FastQCFastQC Report
Thu 31 May 2018
H2KT5AFXY_n01_AH9722A-0518.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2KT5AFXY_n01_AH9722A-0518.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8505354
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC32150.07.60833248-49
AGGGGGG21450.07.529252572-73
GCCGTCT28750.06.773439448-49
CGTATGC35800.06.56727844-45
CATCTCG30800.06.399714538-39
TATGCCG38800.06.36553446-47
GTATGCC32750.06.236204644-45
ACTTAGG40700.06.12672132-33
GCATCTC39500.05.71162538-39
AGGCATC46350.05.63606736-37
GCACACG96900.05.41805594-95
TTAGGCA46500.05.413599534-35
CTCGTAT42450.05.37064942-43
CTTAGGC37850.05.3331832-33
AAGGGGG29850.05.33090272-73
ATGCCGT39700.05.264115346-47
ATCTCGT44150.05.110061640-41
CCGTCTT46250.05.083428450-51
AGCACAC116050.05.05622994-95
AGATCGG185200.05.053941294-95
Produced by FastQC (version 0.11.5)