FastQCFastQC Report
Thu 31 May 2018
H2KT5AFXY_n01_AH9120B-0518.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH2KT5AFXY_n01_AH9120B-0518.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6399457
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC24900.016.49977348-49
CGATCTC22250.014.83585638-39
CACGATC23700.013.62756936-37
CGTATGC30200.013.05355944-45
TATGCCG33000.012.52169546-47
CCGTCTT36750.011.69640650-51
CTCGTAT31600.011.498260542-43
AAGGGGG24350.011.21662872-73
ATCACGA37350.09.79169734-35
CCAGTCA44550.09.70178126-27
AGTCACA44100.09.58537828-29
GCCGTCT25650.09.53632648-49
AGGGGGG20050.09.47630572-73
ATCTCGT35950.09.24819540-41
GTATGCC29450.08.7089644-45
GATCTCG24650.08.38166238-39
TCACATC51700.08.17630930-31
ATGCCGT31800.07.916014746-47
CATCACG32350.07.7814332-33
CGTCTGA55150.07.75097816-17
Produced by FastQC (version 0.11.5)